Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_08345 and gfcB are separated by 106 nucleotides gfcB and gfcC overlap by 4 nucleotides gfcC and gfcD overlap by 1 nucleotides
JDDGAC_08345: JDDGAC_08345 - Threonine-rich inner membrane protein GfcA, at 1,465,168 to 1,465,473
_08345
JDDGAC_08350: gfcB - Uncharacterized lipoprotein GfcB, at 1,465,580 to 1,466,224
gfcB
JDDGAC_08355: gfcC - Uncharacterized protein GfcC, at 1,466,221 to 1,466,967
gfcC
JDDGAC_08360: gfcD - Uncharacterized lipoprotein GfcD, at 1,466,967 to 1,469,063
gfcD
Position (kb) 1466
1467 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1465.611 kb on + strand at 1465.628 kb on - strand at 1465.783 kb on + strand, within gfcB at 1465.784 kb on - strand, within gfcB at 1466.227 kb on - strand at 1466.239 kb on + strand at 1466.301 kb on + strand, within gfcC at 1466.301 kb on + strand, within gfcC at 1466.305 kb on + strand, within gfcC at 1466.445 kb on + strand, within gfcC at 1466.520 kb on + strand, within gfcC at 1466.635 kb on + strand, within gfcC at 1466.635 kb on + strand, within gfcC at 1466.636 kb on - strand, within gfcC at 1466.636 kb on - strand, within gfcC at 1466.636 kb on - strand, within gfcC at 1466.637 kb on + strand, within gfcC at 1466.637 kb on + strand, within gfcC at 1466.645 kb on - strand, within gfcC at 1466.667 kb on + strand, within gfcC at 1466.668 kb on - strand, within gfcC at 1466.793 kb on + strand, within gfcC at 1466.879 kb on + strand, within gfcC at 1466.897 kb on + strand at 1466.989 kb on + strand at 1466.989 kb on + strand at 1467.034 kb on + strand at 1467.163 kb on - strand at 1467.171 kb on + strand at 1467.221 kb on + strand, within gfcD at 1467.239 kb on + strand, within gfcD at 1467.239 kb on + strand, within gfcD at 1467.243 kb on + strand, within gfcD at 1467.243 kb on + strand, within gfcD at 1467.244 kb on - strand, within gfcD at 1467.279 kb on + strand, within gfcD at 1467.354 kb on - strand, within gfcD at 1467.363 kb on - strand, within gfcD at 1467.363 kb on - strand, within gfcD at 1467.393 kb on + strand, within gfcD at 1467.507 kb on + strand, within gfcD at 1467.507 kb on + strand, within gfcD at 1467.507 kb on + strand, within gfcD at 1467.507 kb on + strand, within gfcD at 1467.507 kb on + strand, within gfcD at 1467.508 kb on - strand, within gfcD at 1467.508 kb on - strand, within gfcD at 1467.651 kb on + strand, within gfcD at 1467.873 kb on + strand, within gfcD at 1467.897 kb on - strand, within gfcD at 1467.960 kb on + strand, within gfcD at 1467.961 kb on - strand, within gfcD at 1467.961 kb on - strand, within gfcD at 1467.961 kb on - strand, within gfcD at 1467.962 kb on + strand, within gfcD at 1467.962 kb on + strand, within gfcD at 1467.963 kb on - strand, within gfcD
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 1,465,611 + +0.1 1,465,628 - +0.4 1,465,783 + gfcB JDDGAC_08350 0.31 +1.1 1,465,784 - gfcB JDDGAC_08350 0.32 +0.8 1,466,227 - +0.5 1,466,239 + -0.2 1,466,301 + gfcC JDDGAC_08355 0.11 -0.2 1,466,301 + gfcC JDDGAC_08355 0.11 +0.2 1,466,305 + gfcC JDDGAC_08355 0.11 -0.3 1,466,445 + gfcC JDDGAC_08355 0.30 +0.6 1,466,520 + gfcC JDDGAC_08355 0.40 +0.3 1,466,635 + gfcC JDDGAC_08355 0.55 -0.1 1,466,635 + gfcC JDDGAC_08355 0.55 +3.1 1,466,636 - gfcC JDDGAC_08355 0.56 -2.0 1,466,636 - gfcC JDDGAC_08355 0.56 -1.0 1,466,636 - gfcC JDDGAC_08355 0.56 -0.8 1,466,637 + gfcC JDDGAC_08355 0.56 -0.8 1,466,637 + gfcC JDDGAC_08355 0.56 -0.5 1,466,645 - gfcC JDDGAC_08355 0.57 +0.1 1,466,667 + gfcC JDDGAC_08355 0.60 -0.1 1,466,668 - gfcC JDDGAC_08355 0.60 -1.4 1,466,793 + gfcC JDDGAC_08355 0.77 +0.9 1,466,879 + gfcC JDDGAC_08355 0.88 +0.0 1,466,897 + +0.3 1,466,989 + -0.5 1,466,989 + -0.3 1,467,034 + -2.1 1,467,163 - -1.4 1,467,171 + -1.2 1,467,221 + gfcD JDDGAC_08360 0.12 -0.3 1,467,239 + gfcD JDDGAC_08360 0.13 -1.6 1,467,239 + gfcD JDDGAC_08360 0.13 -0.8 1,467,243 + gfcD JDDGAC_08360 0.13 -0.1 1,467,243 + gfcD JDDGAC_08360 0.13 -1.8 1,467,244 - gfcD JDDGAC_08360 0.13 -0.1 1,467,279 + gfcD JDDGAC_08360 0.15 -1.4 1,467,354 - gfcD JDDGAC_08360 0.18 -0.5 1,467,363 - gfcD JDDGAC_08360 0.19 +0.3 1,467,363 - gfcD JDDGAC_08360 0.19 +2.1 1,467,393 + gfcD JDDGAC_08360 0.20 +0.3 1,467,507 + gfcD JDDGAC_08360 0.26 +0.6 1,467,507 + gfcD JDDGAC_08360 0.26 -1.5 1,467,507 + gfcD JDDGAC_08360 0.26 -0.9 1,467,507 + gfcD JDDGAC_08360 0.26 -1.1 1,467,507 + gfcD JDDGAC_08360 0.26 +0.3 1,467,508 - gfcD JDDGAC_08360 0.26 +0.2 1,467,508 - gfcD JDDGAC_08360 0.26 +1.7 1,467,651 + gfcD JDDGAC_08360 0.33 +0.2 1,467,873 + gfcD JDDGAC_08360 0.43 -0.9 1,467,897 - gfcD JDDGAC_08360 0.44 +0.0 1,467,960 + gfcD JDDGAC_08360 0.47 -0.3 1,467,961 - gfcD JDDGAC_08360 0.47 +0.9 1,467,961 - gfcD JDDGAC_08360 0.47 +0.1 1,467,961 - gfcD JDDGAC_08360 0.47 -2.1 1,467,962 + gfcD JDDGAC_08360 0.47 +0.9 1,467,962 + gfcD JDDGAC_08360 0.47 -0.0 1,467,963 - gfcD JDDGAC_08360 0.47 +1.0
Or see this region's nucleotide sequence