Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yncD and mcbR are separated by 35 nucleotides mcbR and curA are separated by 197 nucleotides curA and mddA are separated by 180 nucleotides mddA and JDDGAC_04030 overlap by 4 nucleotides
JDDGAC_04010: yncD - putative TonB-dependent receptor YncD, at 700,402 to 702,504
yncD
JDDGAC_04015: mcbR - colanic acid/biofilm transcriptional regulator McbR, at 702,540 to 703,205
mcbR
JDDGAC_04020: curA - NADPH-dependent curcumin/dihydrocurcumin reductase, at 703,403 to 704,440
curA
JDDGAC_04025: mddA - L-methionine sulfoximine/L-methionine sulfone acetyltransferase, at 704,621 to 705,139
mddA
JDDGAC_04030: JDDGAC_04030 - Putative inner membrane exporter, YdcZ, at 705,136 to 705,585
_04030
Position (kb) 703
704
705 Strain fitness (log2 ratio) -2
-1
0
1
2 at 702.551 kb on - strand at 703.386 kb on - strand at 703.448 kb on - strand at 703.695 kb on - strand, within curA at 703.724 kb on - strand, within curA at 703.737 kb on - strand, within curA at 703.780 kb on + strand, within curA at 703.860 kb on - strand, within curA at 703.924 kb on + strand, within curA at 703.925 kb on - strand, within curA at 704.000 kb on - strand, within curA at 704.019 kb on - strand, within curA at 704.027 kb on - strand, within curA at 704.029 kb on - strand, within curA at 704.029 kb on - strand, within curA at 704.270 kb on - strand, within curA at 704.270 kb on - strand, within curA at 704.282 kb on - strand, within curA at 704.283 kb on + strand, within curA at 704.284 kb on - strand, within curA at 704.476 kb on + strand at 704.581 kb on + strand at 704.581 kb on + strand at 704.582 kb on - strand at 704.582 kb on - strand at 704.672 kb on + strand at 704.673 kb on - strand, within mddA at 704.690 kb on + strand, within mddA at 704.691 kb on - strand, within mddA at 704.764 kb on - strand, within mddA at 704.764 kb on - strand, within mddA at 704.836 kb on + strand, within mddA at 704.857 kb on + strand, within mddA at 705.091 kb on + strand at 705.358 kb on - strand, within JDDGAC_04030
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 702,551 - -0.9 703,386 - +1.3 703,448 - -2.0 703,695 - curA JDDGAC_04020 0.28 -1.6 703,724 - curA JDDGAC_04020 0.31 +0.7 703,737 - curA JDDGAC_04020 0.32 +1.0 703,780 + curA JDDGAC_04020 0.36 -0.2 703,860 - curA JDDGAC_04020 0.44 -1.6 703,924 + curA JDDGAC_04020 0.50 -0.6 703,925 - curA JDDGAC_04020 0.50 -1.4 704,000 - curA JDDGAC_04020 0.58 -2.0 704,019 - curA JDDGAC_04020 0.59 +2.0 704,027 - curA JDDGAC_04020 0.60 -1.5 704,029 - curA JDDGAC_04020 0.60 +0.8 704,029 - curA JDDGAC_04020 0.60 -0.1 704,270 - curA JDDGAC_04020 0.84 +0.9 704,270 - curA JDDGAC_04020 0.84 +0.1 704,282 - curA JDDGAC_04020 0.85 +1.5 704,283 + curA JDDGAC_04020 0.85 -1.4 704,284 - curA JDDGAC_04020 0.85 -1.2 704,476 + +0.3 704,581 + -0.2 704,581 + -1.3 704,582 - +0.0 704,582 - +0.6 704,672 + -0.1 704,673 - mddA JDDGAC_04025 0.10 -2.4 704,690 + mddA JDDGAC_04025 0.13 -2.0 704,691 - mddA JDDGAC_04025 0.13 -0.1 704,764 - mddA JDDGAC_04025 0.28 +0.9 704,764 - mddA JDDGAC_04025 0.28 +0.2 704,836 + mddA JDDGAC_04025 0.41 +2.7 704,857 + mddA JDDGAC_04025 0.45 -1.7 705,091 + -0.3 705,358 - JDDGAC_04030 0.49 +0.1
Or see this region's nucleotide sequence