Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt shiA and rfaF are separated by 313 nucleotides rfaF and yeeJ are separated by 261 nucleotides
JDDGAC_29315: shiA - shikimate transporter, at 5,592,215 to 5,593,531
shiA
JDDGAC_29320: rfaF - Glycosyltransferase family 9 (heptosyltransferase), at 5,593,845 to 5,594,897
rfaF
JDDGAC_29325: yeeJ - Uncharacterized protein YeeJ, at 5,595,159 to 5,603,168
yeeJ
Position (kb) 5593
5594
5595 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5593.242 kb on - strand, within shiA at 5593.242 kb on - strand, within shiA at 5593.253 kb on - strand, within shiA at 5593.253 kb on - strand, within shiA at 5593.362 kb on - strand, within shiA at 5593.411 kb on - strand at 5593.482 kb on - strand at 5593.531 kb on + strand at 5593.563 kb on + strand at 5593.563 kb on + strand at 5593.564 kb on - strand at 5593.577 kb on + strand at 5593.598 kb on - strand at 5593.600 kb on - strand at 5593.772 kb on - strand at 5593.817 kb on + strand at 5593.880 kb on + strand at 5593.893 kb on + strand at 5594.086 kb on + strand, within rfaF at 5594.425 kb on + strand, within rfaF at 5594.425 kb on + strand, within rfaF at 5594.426 kb on - strand, within rfaF at 5594.466 kb on + strand, within rfaF at 5594.489 kb on + strand, within rfaF at 5594.694 kb on + strand, within rfaF at 5594.747 kb on + strand, within rfaF at 5594.843 kb on + strand at 5594.843 kb on + strand at 5594.903 kb on + strand at 5594.903 kb on + strand at 5594.907 kb on + strand at 5594.907 kb on + strand at 5594.907 kb on + strand at 5594.907 kb on + strand at 5594.908 kb on - strand at 5594.916 kb on + strand at 5594.916 kb on + strand at 5595.238 kb on - strand at 5595.238 kb on - strand at 5595.241 kb on + strand at 5595.241 kb on + strand at 5595.281 kb on + strand at 5595.338 kb on - strand at 5595.487 kb on + strand at 5595.489 kb on + strand at 5595.491 kb on + strand at 5595.491 kb on + strand at 5595.492 kb on - strand at 5595.492 kb on - strand at 5595.492 kb on - strand at 5595.492 kb on - strand at 5595.492 kb on - strand at 5595.492 kb on - strand at 5595.493 kb on + strand at 5595.494 kb on - strand at 5595.494 kb on - strand at 5595.494 kb on - strand at 5595.555 kb on - strand at 5595.695 kb on + strand at 5595.705 kb on + strand at 5595.723 kb on + strand at 5595.724 kb on - strand at 5595.883 kb on + strand at 5595.883 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 5,593,242 - shiA JDDGAC_29315 0.78 -0.4 5,593,242 - shiA JDDGAC_29315 0.78 +1.4 5,593,253 - shiA JDDGAC_29315 0.79 +0.3 5,593,253 - shiA JDDGAC_29315 0.79 +0.9 5,593,362 - shiA JDDGAC_29315 0.87 -1.2 5,593,411 - -0.8 5,593,482 - +0.5 5,593,531 + +0.5 5,593,563 + -1.7 5,593,563 + -1.4 5,593,564 - +0.5 5,593,577 + +1.0 5,593,598 - +1.6 5,593,600 - +0.2 5,593,772 - +0.3 5,593,817 + -0.3 5,593,880 + -4.3 5,593,893 + -0.1 5,594,086 + rfaF JDDGAC_29320 0.23 +0.5 5,594,425 + rfaF JDDGAC_29320 0.55 +0.5 5,594,425 + rfaF JDDGAC_29320 0.55 +0.6 5,594,426 - rfaF JDDGAC_29320 0.55 -1.1 5,594,466 + rfaF JDDGAC_29320 0.59 -0.5 5,594,489 + rfaF JDDGAC_29320 0.61 +0.6 5,594,694 + rfaF JDDGAC_29320 0.81 -0.3 5,594,747 + rfaF JDDGAC_29320 0.86 +1.0 5,594,843 + +0.3 5,594,843 + -1.6 5,594,903 + -0.3 5,594,903 + -0.1 5,594,907 + +2.8 5,594,907 + -0.9 5,594,907 + +0.5 5,594,907 + -0.6 5,594,908 - +0.5 5,594,916 + -0.5 5,594,916 + -1.1 5,595,238 - +0.4 5,595,238 - -1.7 5,595,241 + -1.7 5,595,241 + -0.3 5,595,281 + -0.5 5,595,338 - -0.8 5,595,487 + +0.2 5,595,489 + -0.1 5,595,491 + -1.7 5,595,491 + +0.5 5,595,492 - -0.3 5,595,492 - +0.6 5,595,492 - -0.3 5,595,492 - +0.1 5,595,492 - +1.3 5,595,492 - -0.0 5,595,493 + -0.1 5,595,494 - -0.1 5,595,494 - -1.5 5,595,494 - -2.6 5,595,555 - +0.5 5,595,695 + -0.3 5,595,705 + -1.1 5,595,723 + +0.0 5,595,724 - +1.5 5,595,883 + -1.2 5,595,883 + -1.9
Or see this region's nucleotide sequence