Strain Fitness in Escherichia coli ECRC98 around JDDGAC_29300

Experiment: WM_JK45

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeO and Asn_trna are separated by 100 nucleotidesAsn_trna and ycdB are separated by 449 nucleotides JDDGAC_29295: yeeO - toxic metabolite efflux MATE transporter YeeO, at 5,587,520 to 5,588,974 yeeO JDDGAC_29300: Asn_trna - tRNA-Asn(gtt), at 5,589,075 to 5,589,150 _trna JDDGAC_29305: ycdB - putative transcriptional regulatory protein YcdB, at 5,589,600 to 5,590,316 ycdB Position (kb) 5589 5590Strain fitness (log2 ratio) -2 -1 0 1 2at 5588.089 kb on + strand, within yeeOat 5588.095 kb on + strand, within yeeOat 5588.190 kb on - strand, within yeeOat 5588.191 kb on + strand, within yeeOat 5588.290 kb on + strand, within yeeOat 5588.290 kb on + strand, within yeeOat 5588.314 kb on + strand, within yeeOat 5588.474 kb on - strand, within yeeOat 5588.482 kb on + strand, within yeeOat 5588.483 kb on - strand, within yeeOat 5588.512 kb on - strand, within yeeOat 5588.676 kb on + strand, within yeeOat 5588.676 kb on + strand, within yeeOat 5588.680 kb on + strand, within yeeOat 5588.681 kb on - strand, within yeeOat 5588.749 kb on + strand, within yeeOat 5588.750 kb on - strand, within yeeOat 5588.750 kb on - strand, within yeeOat 5588.762 kb on - strand, within yeeOat 5589.173 kb on + strandat 5589.355 kb on + strandat 5589.416 kb on + strandat 5589.900 kb on - strand, within ycdBat 5589.900 kb on - strand, within ycdBat 5589.932 kb on - strand, within ycdB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK45
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5,588,089 + yeeO JDDGAC_29295 0.39 +0.6
5,588,095 + yeeO JDDGAC_29295 0.40 -0.5
5,588,190 - yeeO JDDGAC_29295 0.46 -0.6
5,588,191 + yeeO JDDGAC_29295 0.46 -1.3
5,588,290 + yeeO JDDGAC_29295 0.53 +1.0
5,588,290 + yeeO JDDGAC_29295 0.53 +1.4
5,588,314 + yeeO JDDGAC_29295 0.55 -1.6
5,588,474 - yeeO JDDGAC_29295 0.66 +1.0
5,588,482 + yeeO JDDGAC_29295 0.66 -1.3
5,588,483 - yeeO JDDGAC_29295 0.66 -1.3
5,588,512 - yeeO JDDGAC_29295 0.68 -0.5
5,588,676 + yeeO JDDGAC_29295 0.79 +0.3
5,588,676 + yeeO JDDGAC_29295 0.79 -0.1
5,588,680 + yeeO JDDGAC_29295 0.80 -0.5
5,588,681 - yeeO JDDGAC_29295 0.80 -0.3
5,588,749 + yeeO JDDGAC_29295 0.84 +0.3
5,588,750 - yeeO JDDGAC_29295 0.85 +0.3
5,588,750 - yeeO JDDGAC_29295 0.85 +0.3
5,588,762 - yeeO JDDGAC_29295 0.85 -0.3
5,589,173 + -1.3
5,589,355 + -1.9
5,589,416 + +2.6
5,589,900 - ycdB JDDGAC_29305 0.42 +0.2
5,589,900 - ycdB JDDGAC_29305 0.42 +1.9
5,589,932 - ycdB JDDGAC_29305 0.46 -1.5

Or see this region's nucleotide sequence