Strain Fitness in Escherichia coli ECRC98 around JDDGAC_24255

Experiment: WM_JK45

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_JK45
4,649,308	+				+0.2
4,649,342	+				-0.0
4,649,343	-				-0.0
4,649,343	-				-0.6
4,649,343	-				+0.8
4,649,344	+				-1.3
4,649,369	+				-0.4
4,649,635	+	hycD	JDDGAC_24250	0.33	-0.0
4,649,635	+	hycD	JDDGAC_24250	0.33	-0.3
4,649,636	-	hycD	JDDGAC_24250	0.33	+0.3
4,650,048	+	hycD	JDDGAC_24250	0.77	+0.1
4,650,049	-	hycD	JDDGAC_24250	0.78	+0.5
4,650,049	-	hycD	JDDGAC_24250	0.78	-0.9
4,650,183	+				-0.1
4,650,186	+				+0.4
4,650,187	-				+0.7
4,650,257	+				+0.4
4,650,257	+				+2.4
4,650,300	+				+0.7
4,650,393	+				+0.1
4,650,393	+				-0.7
4,650,393	+				+1.5
4,650,394	-				-1.5
4,650,394	-				+0.7
4,650,394	-				-0.2
4,650,420	+				-0.7
4,650,495	+	hycE	JDDGAC_24255	0.13	+0.3
4,650,499	-	hycE	JDDGAC_24255	0.13	-1.2
4,650,499	-	hycE	JDDGAC_24255	0.13	+0.2
4,650,524	+	hycE	JDDGAC_24255	0.15	-1.9
4,650,524	+	hycE	JDDGAC_24255	0.15	+0.4
4,650,524	+	hycE	JDDGAC_24255	0.15	-1.5
4,650,525	-	hycE	JDDGAC_24255	0.15	-0.8
4,650,525	-	hycE	JDDGAC_24255	0.15	+0.8
4,650,574	-	hycE	JDDGAC_24255	0.18	-0.6
4,650,625	+	hycE	JDDGAC_24255	0.21	+0.2
4,650,632	+	hycE	JDDGAC_24255	0.21	-1.1
4,650,632	+	hycE	JDDGAC_24255	0.21	-1.8
4,650,633	-	hycE	JDDGAC_24255	0.21	+0.7
4,650,636	+	hycE	JDDGAC_24255	0.21	-1.3
4,650,636	+	hycE	JDDGAC_24255	0.21	-1.0
4,650,637	-	hycE	JDDGAC_24255	0.21	+1.5
4,650,637	-	hycE	JDDGAC_24255	0.21	-0.3
4,650,720	-	hycE	JDDGAC_24255	0.26	-0.2
4,650,775	-	hycE	JDDGAC_24255	0.29	+0.4
4,650,775	-	hycE	JDDGAC_24255	0.29	+0.8
4,650,915	+	hycE	JDDGAC_24255	0.38	-0.6
4,650,916	-	hycE	JDDGAC_24255	0.38	+0.1
4,650,960	+	hycE	JDDGAC_24255	0.40	+0.3
4,650,963	-	hycE	JDDGAC_24255	0.40	+0.9
4,651,055	+	hycE	JDDGAC_24255	0.46	-1.4
4,651,105	+	hycE	JDDGAC_24255	0.49	-0.5
4,651,105	+	hycE	JDDGAC_24255	0.49	-0.7
4,651,553	+	hycE	JDDGAC_24255	0.75	+1.0
4,651,554	-	hycE	JDDGAC_24255	0.75	-0.2
4,651,575	-	hycE	JDDGAC_24255	0.76	-0.6
4,651,575	-	hycE	JDDGAC_24255	0.76	+0.3
4,651,578	-	hycE	JDDGAC_24255	0.76	-2.0
4,651,578	-	hycE	JDDGAC_24255	0.76	-0.2
4,651,587	+	hycE	JDDGAC_24255	0.77	-0.7
4,651,587	+	hycE	JDDGAC_24255	0.77	+1.0
4,651,588	-	hycE	JDDGAC_24255	0.77	-2.2
4,651,588	-	hycE	JDDGAC_24255	0.77	-0.8
4,651,588	-	hycE	JDDGAC_24255	0.77	+0.1
4,651,588	-	hycE	JDDGAC_24255	0.77	+1.1
4,651,590	-	hycE	JDDGAC_24255	0.77	-0.4
4,651,612	-	hycE	JDDGAC_24255	0.78	+1.1
4,651,612	-	hycE	JDDGAC_24255	0.78	+0.5
4,651,659	-	hycE	JDDGAC_24255	0.81	+0.8
4,651,659	-	hycE	JDDGAC_24255	0.81	+0.5
4,651,803	+	hycE	JDDGAC_24255	0.89	+0.2
4,651,803	+	hycE	JDDGAC_24255	0.89	+0.7
4,651,804	-	hycE	JDDGAC_24255	0.90	+0.1
4,651,851	-				-0.6
4,651,866	+				-0.3
4,651,867	-				+0.5
4,651,867	-				+0.0
4,651,980	+				-0.7
4,652,402	+	hycF	JDDGAC_24260	0.76	-0.9
4,652,403	-	hycF	JDDGAC_24260	0.76	+1.1
4,652,544	+				+1.2
4,652,544	+				+0.6
4,652,545	-				+1.3
4,652,547	+				-0.8
4,652,622	+	hycG	JDDGAC_24265	0.11	-1.2
4,652,648	+	hycG	JDDGAC_24265	0.15	-1.3
4,652,778	+	hycG	JDDGAC_24265	0.32	-2.6
4,652,909	+	hycG	JDDGAC_24265	0.49	-1.4
4,652,954	+	hycG	JDDGAC_24265	0.55	+0.0
4,652,954	+	hycG	JDDGAC_24265	0.55	+0.8
4,652,954	+	hycG	JDDGAC_24265	0.55	-0.6
4,652,954	+	hycG	JDDGAC_24265	0.55	-0.4
4,652,955	-	hycG	JDDGAC_24265	0.55	-1.0
4,652,955	-	hycG	JDDGAC_24265	0.55	+0.3
4,652,955	-	hycG	JDDGAC_24265	0.55	+1.5
4,652,955	-	hycG	JDDGAC_24265	0.55	-0.2
4,652,956	+	hycG	JDDGAC_24265	0.55	-1.1
4,652,957	-	hycG	JDDGAC_24265	0.55	+0.3