Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhaI and yhaH are separated by 240 nucleotides yhaH and yqjG are separated by 291 nucleotides yqjG and yqjF are separated by 69 nucleotides yqjF and yqjK are separated by 95 nucleotides yqjK and yqjE overlap by 11 nucleotides
JDDGAC_22090: yhaI - Inner membrane protein YhaI, at 4,225,075 to 4,225,431
yhaI
JDDGAC_22095: yhaH - Inner membrane protein YhaH, at 4,225,672 to 4,226,037
yhaH
JDDGAC_22100: yqjG - glutathionyl-hydroquinone reductase YqjG, at 4,226,329 to 4,227,315
yqjG
JDDGAC_22105: yqjF - Inner membrane protein YqjF, at 4,227,385 to 4,227,867
yqjF
JDDGAC_22110: yqjK - Uncharacterized protein YqjK, at 4,227,963 to 4,228,262
yqjK
JDDGAC_22115: yqjE - Inner membrane protein YqjE, at 4,228,252 to 4,228,656
yqjE
Position (kb) 4226
4227
4228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4225.353 kb on + strand, within yhaI at 4225.412 kb on - strand at 4225.421 kb on + strand at 4225.483 kb on - strand at 4225.515 kb on + strand at 4225.515 kb on + strand at 4225.516 kb on - strand at 4225.735 kb on - strand, within yhaH at 4225.749 kb on + strand, within yhaH at 4225.749 kb on + strand, within yhaH at 4225.750 kb on - strand, within yhaH at 4225.777 kb on + strand, within yhaH at 4225.778 kb on - strand, within yhaH at 4225.778 kb on - strand, within yhaH at 4225.778 kb on - strand, within yhaH at 4225.858 kb on - strand, within yhaH at 4225.938 kb on + strand, within yhaH at 4225.959 kb on + strand, within yhaH at 4226.090 kb on - strand at 4226.130 kb on + strand at 4226.154 kb on + strand at 4226.224 kb on - strand at 4226.336 kb on - strand at 4226.391 kb on + strand at 4226.415 kb on + strand at 4226.430 kb on - strand, within yqjG at 4226.487 kb on + strand, within yqjG at 4226.487 kb on + strand, within yqjG at 4226.488 kb on - strand, within yqjG at 4226.488 kb on - strand, within yqjG at 4226.511 kb on + strand, within yqjG at 4226.558 kb on + strand, within yqjG at 4226.558 kb on + strand, within yqjG at 4226.559 kb on - strand, within yqjG at 4226.559 kb on - strand, within yqjG at 4226.559 kb on - strand, within yqjG at 4226.559 kb on - strand, within yqjG at 4226.559 kb on - strand, within yqjG at 4226.644 kb on + strand, within yqjG at 4226.699 kb on + strand, within yqjG at 4226.699 kb on + strand, within yqjG at 4226.700 kb on - strand, within yqjG at 4226.731 kb on - strand, within yqjG at 4226.769 kb on + strand, within yqjG at 4226.804 kb on + strand, within yqjG at 4226.807 kb on + strand, within yqjG at 4226.807 kb on + strand, within yqjG at 4226.808 kb on - strand, within yqjG at 4226.808 kb on - strand, within yqjG at 4226.922 kb on + strand, within yqjG at 4226.936 kb on + strand, within yqjG at 4226.937 kb on - strand, within yqjG at 4226.984 kb on + strand, within yqjG at 4226.985 kb on - strand, within yqjG at 4227.152 kb on + strand, within yqjG at 4227.171 kb on + strand, within yqjG at 4227.222 kb on + strand at 4227.332 kb on - strand at 4227.369 kb on + strand at 4227.370 kb on - strand at 4227.386 kb on + strand at 4227.418 kb on - strand at 4227.436 kb on - strand, within yqjF at 4227.639 kb on + strand, within yqjF at 4227.639 kb on + strand, within yqjF at 4227.639 kb on + strand, within yqjF at 4227.667 kb on - strand, within yqjF at 4227.667 kb on - strand, within yqjF at 4227.667 kb on - strand, within yqjF at 4227.668 kb on + strand, within yqjF at 4227.668 kb on + strand, within yqjF at 4227.668 kb on + strand, within yqjF at 4227.668 kb on + strand, within yqjF at 4227.669 kb on - strand, within yqjF at 4227.669 kb on - strand, within yqjF at 4227.669 kb on - strand, within yqjF at 4227.669 kb on - strand, within yqjF at 4227.669 kb on - strand, within yqjF at 4227.837 kb on + strand at 4227.868 kb on - strand at 4228.021 kb on - strand, within yqjK at 4228.021 kb on - strand, within yqjK at 4228.056 kb on - strand, within yqjK at 4228.058 kb on + strand, within yqjK at 4228.122 kb on + strand, within yqjK at 4228.130 kb on + strand, within yqjK at 4228.218 kb on - strand, within yqjK at 4228.232 kb on + strand, within yqjK
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 4,225,353 + yhaI JDDGAC_22090 0.78 +1.2 4,225,412 - -1.2 4,225,421 + -1.6 4,225,483 - +0.4 4,225,515 + +0.5 4,225,515 + -0.2 4,225,516 - +0.3 4,225,735 - yhaH JDDGAC_22095 0.17 +0.9 4,225,749 + yhaH JDDGAC_22095 0.21 +0.3 4,225,749 + yhaH JDDGAC_22095 0.21 +0.2 4,225,750 - yhaH JDDGAC_22095 0.21 +0.1 4,225,777 + yhaH JDDGAC_22095 0.29 -0.0 4,225,778 - yhaH JDDGAC_22095 0.29 -0.7 4,225,778 - yhaH JDDGAC_22095 0.29 -0.9 4,225,778 - yhaH JDDGAC_22095 0.29 -3.5 4,225,858 - yhaH JDDGAC_22095 0.51 -0.3 4,225,938 + yhaH JDDGAC_22095 0.73 -0.8 4,225,959 + yhaH JDDGAC_22095 0.78 -0.9 4,226,090 - +0.1 4,226,130 + +0.8 4,226,154 + +0.0 4,226,224 - -2.0 4,226,336 - +0.2 4,226,391 + +0.5 4,226,415 + -0.1 4,226,430 - yqjG JDDGAC_22100 0.10 +0.2 4,226,487 + yqjG JDDGAC_22100 0.16 -0.1 4,226,487 + yqjG JDDGAC_22100 0.16 -0.6 4,226,488 - yqjG JDDGAC_22100 0.16 -0.2 4,226,488 - yqjG JDDGAC_22100 0.16 -0.2 4,226,511 + yqjG JDDGAC_22100 0.18 -1.1 4,226,558 + yqjG JDDGAC_22100 0.23 +0.7 4,226,558 + yqjG JDDGAC_22100 0.23 +1.5 4,226,559 - yqjG JDDGAC_22100 0.23 +0.4 4,226,559 - yqjG JDDGAC_22100 0.23 -1.5 4,226,559 - yqjG JDDGAC_22100 0.23 -0.8 4,226,559 - yqjG JDDGAC_22100 0.23 +0.0 4,226,559 - yqjG JDDGAC_22100 0.23 -1.0 4,226,644 + yqjG JDDGAC_22100 0.32 +0.8 4,226,699 + yqjG JDDGAC_22100 0.37 -0.9 4,226,699 + yqjG JDDGAC_22100 0.37 -0.3 4,226,700 - yqjG JDDGAC_22100 0.38 -0.1 4,226,731 - yqjG JDDGAC_22100 0.41 +0.1 4,226,769 + yqjG JDDGAC_22100 0.45 +0.9 4,226,804 + yqjG JDDGAC_22100 0.48 +0.7 4,226,807 + yqjG JDDGAC_22100 0.48 -0.4 4,226,807 + yqjG JDDGAC_22100 0.48 +1.5 4,226,808 - yqjG JDDGAC_22100 0.49 -1.0 4,226,808 - yqjG JDDGAC_22100 0.49 -2.0 4,226,922 + yqjG JDDGAC_22100 0.60 -0.6 4,226,936 + yqjG JDDGAC_22100 0.61 +0.5 4,226,937 - yqjG JDDGAC_22100 0.62 -2.6 4,226,984 + yqjG JDDGAC_22100 0.66 +0.4 4,226,985 - yqjG JDDGAC_22100 0.66 +0.7 4,227,152 + yqjG JDDGAC_22100 0.83 +1.9 4,227,171 + yqjG JDDGAC_22100 0.85 -1.2 4,227,222 + -0.7 4,227,332 - +0.3 4,227,369 + +2.0 4,227,370 - -1.2 4,227,386 + +0.3 4,227,418 - +1.7 4,227,436 - yqjF JDDGAC_22105 0.11 +0.5 4,227,639 + yqjF JDDGAC_22105 0.53 +1.4 4,227,639 + yqjF JDDGAC_22105 0.53 +0.2 4,227,639 + yqjF JDDGAC_22105 0.53 -1.0 4,227,667 - yqjF JDDGAC_22105 0.58 -0.3 4,227,667 - yqjF JDDGAC_22105 0.58 +0.4 4,227,667 - yqjF JDDGAC_22105 0.58 -0.9 4,227,668 + yqjF JDDGAC_22105 0.59 -0.1 4,227,668 + yqjF JDDGAC_22105 0.59 -0.1 4,227,668 + yqjF JDDGAC_22105 0.59 -1.3 4,227,668 + yqjF JDDGAC_22105 0.59 -0.0 4,227,669 - yqjF JDDGAC_22105 0.59 +0.4 4,227,669 - yqjF JDDGAC_22105 0.59 +0.1 4,227,669 - yqjF JDDGAC_22105 0.59 -0.2 4,227,669 - yqjF JDDGAC_22105 0.59 +0.7 4,227,669 - yqjF JDDGAC_22105 0.59 +1.4 4,227,837 + -0.0 4,227,868 - +0.1 4,228,021 - yqjK JDDGAC_22110 0.19 +0.4 4,228,021 - yqjK JDDGAC_22110 0.19 +1.3 4,228,056 - yqjK JDDGAC_22110 0.31 +0.4 4,228,058 + yqjK JDDGAC_22110 0.32 +0.3 4,228,122 + yqjK JDDGAC_22110 0.53 +2.0 4,228,130 + yqjK JDDGAC_22110 0.56 +1.2 4,228,218 - yqjK JDDGAC_22110 0.85 +1.3 4,228,232 + yqjK JDDGAC_22110 0.90 +1.8
Or see this region's nucleotide sequence