Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cecR and hlyD are separated by 2 nucleotides hlyD and lptB overlap by 8 nucleotides lptB and ybhS overlap by 8 nucleotides
JDDGAC_09930: cecR - DNA-binding transcriptional regulator CecR, at 1,770,993 to 1,771,664
cecR
JDDGAC_09935: hlyD - secretion protein HlyD, at 1,771,667 to 1,772,662
hlyD
JDDGAC_09940: lptB - LPS export ABC transporter ATP-binding protein, at 1,772,655 to 1,774,391
lptB
JDDGAC_09945: ybhS - putative multidrug ABC transporter permease YbhS, at 1,774,384 to 1,775,517
ybhS
Position (kb) 1772
1773
1774
1775 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1771.662 kb on + strand at 1771.730 kb on + strand at 1771.731 kb on - strand at 1771.792 kb on + strand, within hlyD at 1771.805 kb on - strand, within hlyD at 1771.805 kb on - strand, within hlyD at 1771.901 kb on + strand, within hlyD at 1771.955 kb on + strand, within hlyD at 1771.955 kb on + strand, within hlyD at 1772.033 kb on + strand, within hlyD at 1772.034 kb on - strand, within hlyD at 1772.040 kb on - strand, within hlyD at 1772.054 kb on + strand, within hlyD at 1772.178 kb on - strand, within hlyD at 1772.400 kb on - strand, within hlyD at 1772.400 kb on - strand, within hlyD at 1772.453 kb on + strand, within hlyD at 1772.453 kb on + strand, within hlyD at 1772.453 kb on + strand, within hlyD at 1772.454 kb on - strand, within hlyD at 1772.789 kb on + strand at 1772.904 kb on + strand, within lptB at 1772.905 kb on - strand, within lptB at 1772.906 kb on + strand, within lptB at 1772.907 kb on - strand, within lptB at 1772.928 kb on + strand, within lptB at 1773.029 kb on + strand, within lptB at 1773.167 kb on + strand, within lptB at 1773.303 kb on + strand, within lptB at 1773.304 kb on - strand, within lptB at 1773.530 kb on + strand, within lptB at 1773.555 kb on - strand, within lptB at 1773.611 kb on + strand, within lptB at 1773.612 kb on - strand, within lptB at 1773.617 kb on - strand, within lptB at 1773.894 kb on + strand, within lptB at 1773.942 kb on + strand, within lptB at 1773.942 kb on + strand, within lptB at 1774.010 kb on + strand, within lptB at 1774.042 kb on + strand, within lptB at 1774.049 kb on + strand, within lptB at 1774.050 kb on - strand, within lptB at 1774.379 kb on + strand at 1774.379 kb on + strand at 1774.380 kb on - strand at 1774.380 kb on - strand at 1774.380 kb on - strand at 1774.465 kb on - strand at 1774.516 kb on + strand, within ybhS at 1774.618 kb on + strand, within ybhS at 1774.619 kb on - strand, within ybhS at 1774.698 kb on + strand, within ybhS at 1774.804 kb on + strand, within ybhS at 1774.805 kb on - strand, within ybhS at 1774.883 kb on + strand, within ybhS at 1774.884 kb on - strand, within ybhS at 1775.087 kb on - strand, within ybhS at 1775.087 kb on - strand, within ybhS at 1775.118 kb on + strand, within ybhS at 1775.118 kb on + strand, within ybhS at 1775.118 kb on + strand, within ybhS at 1775.137 kb on - strand, within ybhS at 1775.360 kb on - strand, within ybhS at 1775.377 kb on + strand, within ybhS
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 1,771,662 + +0.7 1,771,730 + +0.3 1,771,731 - -0.8 1,771,792 + hlyD JDDGAC_09935 0.13 -0.7 1,771,805 - hlyD JDDGAC_09935 0.14 -0.1 1,771,805 - hlyD JDDGAC_09935 0.14 +1.5 1,771,901 + hlyD JDDGAC_09935 0.23 +0.7 1,771,955 + hlyD JDDGAC_09935 0.29 +0.2 1,771,955 + hlyD JDDGAC_09935 0.29 -1.2 1,772,033 + hlyD JDDGAC_09935 0.37 -0.2 1,772,034 - hlyD JDDGAC_09935 0.37 -0.3 1,772,040 - hlyD JDDGAC_09935 0.37 -0.9 1,772,054 + hlyD JDDGAC_09935 0.39 +0.9 1,772,178 - hlyD JDDGAC_09935 0.51 +0.2 1,772,400 - hlyD JDDGAC_09935 0.74 +0.9 1,772,400 - hlyD JDDGAC_09935 0.74 -2.3 1,772,453 + hlyD JDDGAC_09935 0.79 -0.4 1,772,453 + hlyD JDDGAC_09935 0.79 -0.7 1,772,453 + hlyD JDDGAC_09935 0.79 -1.7 1,772,454 - hlyD JDDGAC_09935 0.79 +1.5 1,772,789 + -1.7 1,772,904 + lptB JDDGAC_09940 0.14 -1.3 1,772,905 - lptB JDDGAC_09940 0.14 -1.8 1,772,906 + lptB JDDGAC_09940 0.14 +0.5 1,772,907 - lptB JDDGAC_09940 0.15 +1.2 1,772,928 + lptB JDDGAC_09940 0.16 +0.1 1,773,029 + lptB JDDGAC_09940 0.22 +0.8 1,773,167 + lptB JDDGAC_09940 0.29 -1.8 1,773,303 + lptB JDDGAC_09940 0.37 +0.5 1,773,304 - lptB JDDGAC_09940 0.37 -0.2 1,773,530 + lptB JDDGAC_09940 0.50 +0.9 1,773,555 - lptB JDDGAC_09940 0.52 -1.6 1,773,611 + lptB JDDGAC_09940 0.55 -0.8 1,773,612 - lptB JDDGAC_09940 0.55 +1.1 1,773,617 - lptB JDDGAC_09940 0.55 -0.2 1,773,894 + lptB JDDGAC_09940 0.71 +0.1 1,773,942 + lptB JDDGAC_09940 0.74 -0.1 1,773,942 + lptB JDDGAC_09940 0.74 -2.0 1,774,010 + lptB JDDGAC_09940 0.78 -0.4 1,774,042 + lptB JDDGAC_09940 0.80 -0.0 1,774,049 + lptB JDDGAC_09940 0.80 +0.1 1,774,050 - lptB JDDGAC_09940 0.80 +0.2 1,774,379 + +1.0 1,774,379 + -1.3 1,774,380 - +0.7 1,774,380 - -0.4 1,774,380 - -2.3 1,774,465 - -0.0 1,774,516 + ybhS JDDGAC_09945 0.12 +0.1 1,774,618 + ybhS JDDGAC_09945 0.21 +0.1 1,774,619 - ybhS JDDGAC_09945 0.21 +1.7 1,774,698 + ybhS JDDGAC_09945 0.28 +1.7 1,774,804 + ybhS JDDGAC_09945 0.37 -1.3 1,774,805 - ybhS JDDGAC_09945 0.37 +0.0 1,774,883 + ybhS JDDGAC_09945 0.44 +0.3 1,774,884 - ybhS JDDGAC_09945 0.44 +0.0 1,775,087 - ybhS JDDGAC_09945 0.62 +1.8 1,775,087 - ybhS JDDGAC_09945 0.62 +0.4 1,775,118 + ybhS JDDGAC_09945 0.65 +0.2 1,775,118 + ybhS JDDGAC_09945 0.65 +0.6 1,775,118 + ybhS JDDGAC_09945 0.65 -0.5 1,775,137 - ybhS JDDGAC_09945 0.66 -1.7 1,775,360 - ybhS JDDGAC_09945 0.86 -0.3 1,775,377 + ybhS JDDGAC_09945 0.88 -0.3
Or see this region's nucleotide sequence