Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgrR and ycjY are separated by 137 nucleotides ycjY and JDDGAC_04820 overlap by 1 nucleotides JDDGAC_04820 and frsA overlap by 40 nucleotides frsA and wcaG are separated by 20 nucleotides
JDDGAC_04810: pgrR - DNA-binding transcriptional regulator PgrR, at 835,665 to 836,564
pgrR
JDDGAC_04815: ycjY - Uncharacterized protein YcjY, at 836,702 to 837,622
ycjY
JDDGAC_04820: JDDGAC_04820 - Peptidase-S15 domain-containing protein, at 837,622 to 838,002
_04820
JDDGAC_04825: frsA - alpha/beta hydrolase, at 837,963 to 838,553
frsA
JDDGAC_04830: wcaG - NAD-dependent dehydratase, at 838,574 to 839,212
wcaG
Position (kb) 836
837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 835.829 kb on - strand, within pgrR at 835.837 kb on + strand, within pgrR at 836.074 kb on - strand, within pgrR at 836.102 kb on + strand, within pgrR at 836.271 kb on - strand, within pgrR at 836.273 kb on + strand, within pgrR at 836.274 kb on - strand, within pgrR at 836.331 kb on + strand, within pgrR at 836.331 kb on + strand, within pgrR at 836.332 kb on - strand, within pgrR at 836.332 kb on - strand, within pgrR at 836.577 kb on + strand at 836.577 kb on + strand at 836.620 kb on - strand at 836.649 kb on + strand at 836.649 kb on + strand at 836.649 kb on + strand at 836.650 kb on - strand at 836.657 kb on + strand at 836.728 kb on + strand at 836.769 kb on - strand at 836.801 kb on + strand, within ycjY at 836.916 kb on - strand, within ycjY at 837.015 kb on - strand, within ycjY at 837.066 kb on - strand, within ycjY at 837.067 kb on + strand, within ycjY at 837.242 kb on + strand, within ycjY at 837.317 kb on + strand, within ycjY at 837.389 kb on - strand, within ycjY at 837.392 kb on + strand, within ycjY at 837.401 kb on + strand, within ycjY at 837.488 kb on + strand, within ycjY at 837.569 kb on + strand at 837.594 kb on + strand at 837.594 kb on + strand at 837.646 kb on - strand at 837.723 kb on + strand, within JDDGAC_04820 at 837.750 kb on + strand, within JDDGAC_04820 at 837.817 kb on + strand, within JDDGAC_04820 at 838.016 kb on + strand at 838.034 kb on + strand, within frsA at 838.034 kb on + strand, within frsA at 838.239 kb on - strand, within frsA at 838.363 kb on + strand, within frsA at 838.416 kb on + strand, within frsA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 835,829 - pgrR JDDGAC_04810 0.18 -1.0 835,837 + pgrR JDDGAC_04810 0.19 +1.1 836,074 - pgrR JDDGAC_04810 0.45 -0.1 836,102 + pgrR JDDGAC_04810 0.49 +0.7 836,271 - pgrR JDDGAC_04810 0.67 -1.4 836,273 + pgrR JDDGAC_04810 0.68 +1.0 836,274 - pgrR JDDGAC_04810 0.68 +0.6 836,331 + pgrR JDDGAC_04810 0.74 +0.8 836,331 + pgrR JDDGAC_04810 0.74 -1.8 836,332 - pgrR JDDGAC_04810 0.74 -0.2 836,332 - pgrR JDDGAC_04810 0.74 +0.6 836,577 + -0.1 836,577 + -0.0 836,620 - -0.2 836,649 + -1.6 836,649 + -0.1 836,649 + -0.3 836,650 - +0.3 836,657 + +0.6 836,728 + -0.2 836,769 - +0.9 836,801 + ycjY JDDGAC_04815 0.11 -0.0 836,916 - ycjY JDDGAC_04815 0.23 +1.8 837,015 - ycjY JDDGAC_04815 0.34 +1.1 837,066 - ycjY JDDGAC_04815 0.40 +0.9 837,067 + ycjY JDDGAC_04815 0.40 -0.8 837,242 + ycjY JDDGAC_04815 0.59 +2.1 837,317 + ycjY JDDGAC_04815 0.67 +0.0 837,389 - ycjY JDDGAC_04815 0.75 +0.5 837,392 + ycjY JDDGAC_04815 0.75 +0.5 837,401 + ycjY JDDGAC_04815 0.76 +0.4 837,488 + ycjY JDDGAC_04815 0.85 -0.9 837,569 + -2.3 837,594 + -0.1 837,594 + -0.4 837,646 - -0.1 837,723 + JDDGAC_04820 0.27 -3.0 837,750 + JDDGAC_04820 0.34 -0.3 837,817 + JDDGAC_04820 0.51 +1.1 838,016 + -0.1 838,034 + frsA JDDGAC_04825 0.12 +0.2 838,034 + frsA JDDGAC_04825 0.12 +0.6 838,239 - frsA JDDGAC_04825 0.47 +1.2 838,363 + frsA JDDGAC_04825 0.68 -0.5 838,416 + frsA JDDGAC_04825 0.77 -1.3
Or see this region's nucleotide sequence