Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcK and rimL are separated by 234 nucleotides rimL and ydcH are separated by 62 nucleotides ydcH and opgD are separated by 139 nucleotides opgD and ydcJ are separated by 260 nucleotides
JDDGAC_04120: ydcK - YdcK family protein, at 721,272 to 722,252
ydcK
JDDGAC_04125: rimL - 50S ribosomal protein L7/L12-serine acetyltransferase, at 722,487 to 722,783
rimL
JDDGAC_04130: ydcH - Uncharacterized protein YdcH, at 722,846 to 723,070
ydcH
JDDGAC_04135: opgD - glucan biosynthesis protein OpgD, at 723,210 to 724,829
opgD
JDDGAC_04140: ydcJ - Uncharacterized protein YdcJ, at 725,090 to 726,433
ydcJ
Position (kb) 723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 722.245 kb on + strand at 722.246 kb on - strand at 722.248 kb on + strand at 722.248 kb on + strand at 722.269 kb on + strand at 722.287 kb on + strand at 722.786 kb on + strand at 723.014 kb on - strand, within ydcH at 723.014 kb on - strand, within ydcH at 723.070 kb on + strand at 723.235 kb on + strand at 723.314 kb on - strand at 723.314 kb on - strand at 723.314 kb on - strand at 723.314 kb on - strand at 723.314 kb on - strand at 723.371 kb on + strand at 723.372 kb on - strand, within opgD at 723.628 kb on + strand, within opgD at 723.800 kb on - strand, within opgD at 723.810 kb on - strand, within opgD at 723.820 kb on + strand, within opgD at 724.029 kb on - strand, within opgD at 724.058 kb on + strand, within opgD at 724.058 kb on + strand, within opgD at 724.076 kb on - strand, within opgD at 724.135 kb on + strand, within opgD at 724.145 kb on + strand, within opgD at 724.172 kb on - strand, within opgD at 724.256 kb on - strand, within opgD at 724.291 kb on + strand, within opgD at 724.298 kb on - strand, within opgD at 724.298 kb on - strand, within opgD at 724.345 kb on - strand, within opgD at 724.345 kb on - strand, within opgD at 724.374 kb on - strand, within opgD at 724.374 kb on - strand, within opgD at 724.417 kb on - strand, within opgD at 724.447 kb on + strand, within opgD at 724.514 kb on + strand, within opgD at 724.609 kb on + strand, within opgD at 724.622 kb on + strand, within opgD at 724.622 kb on + strand, within opgD at 724.696 kb on - strand at 724.937 kb on - strand at 724.937 kb on - strand at 724.937 kb on - strand at 724.997 kb on + strand at 724.998 kb on - strand at 725.004 kb on - strand at 725.004 kb on - strand at 725.280 kb on + strand, within ydcJ at 725.280 kb on + strand, within ydcJ at 725.284 kb on + strand, within ydcJ at 725.480 kb on - strand, within ydcJ at 725.480 kb on - strand, within ydcJ at 725.518 kb on - strand, within ydcJ at 725.649 kb on - strand, within ydcJ at 725.652 kb on - strand, within ydcJ at 725.749 kb on + strand, within ydcJ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 722,245 + -0.5 722,246 - -0.4 722,248 + -0.9 722,248 + +0.4 722,269 + +1.5 722,287 + -0.7 722,786 + -1.5 723,014 - ydcH JDDGAC_04130 0.75 -0.9 723,014 - ydcH JDDGAC_04130 0.75 +0.4 723,070 + +0.8 723,235 + +0.8 723,314 - -0.1 723,314 - +0.4 723,314 - -1.1 723,314 - -0.3 723,314 - +1.6 723,371 + -0.3 723,372 - opgD JDDGAC_04135 0.10 -0.6 723,628 + opgD JDDGAC_04135 0.26 +0.4 723,800 - opgD JDDGAC_04135 0.36 +0.0 723,810 - opgD JDDGAC_04135 0.37 -1.6 723,820 + opgD JDDGAC_04135 0.38 -1.4 724,029 - opgD JDDGAC_04135 0.51 +0.2 724,058 + opgD JDDGAC_04135 0.52 +1.1 724,058 + opgD JDDGAC_04135 0.52 -0.2 724,076 - opgD JDDGAC_04135 0.53 -0.3 724,135 + opgD JDDGAC_04135 0.57 -0.5 724,145 + opgD JDDGAC_04135 0.58 -1.7 724,172 - opgD JDDGAC_04135 0.59 -1.2 724,256 - opgD JDDGAC_04135 0.65 -0.6 724,291 + opgD JDDGAC_04135 0.67 +1.8 724,298 - opgD JDDGAC_04135 0.67 -0.0 724,298 - opgD JDDGAC_04135 0.67 -2.4 724,345 - opgD JDDGAC_04135 0.70 +0.1 724,345 - opgD JDDGAC_04135 0.70 -0.0 724,374 - opgD JDDGAC_04135 0.72 -1.2 724,374 - opgD JDDGAC_04135 0.72 +3.1 724,417 - opgD JDDGAC_04135 0.75 -0.3 724,447 + opgD JDDGAC_04135 0.76 +1.7 724,514 + opgD JDDGAC_04135 0.80 -0.5 724,609 + opgD JDDGAC_04135 0.86 -2.3 724,622 + opgD JDDGAC_04135 0.87 +0.9 724,622 + opgD JDDGAC_04135 0.87 +0.7 724,696 - -0.4 724,937 - -0.0 724,937 - +0.2 724,937 - +0.2 724,997 + -1.5 724,998 - +0.7 725,004 - +0.5 725,004 - +1.8 725,280 + ydcJ JDDGAC_04140 0.14 +0.5 725,280 + ydcJ JDDGAC_04140 0.14 +2.2 725,284 + ydcJ JDDGAC_04140 0.14 -3.0 725,480 - ydcJ JDDGAC_04140 0.29 +0.1 725,480 - ydcJ JDDGAC_04140 0.29 -1.5 725,518 - ydcJ JDDGAC_04140 0.32 +1.2 725,649 - ydcJ JDDGAC_04140 0.42 +0.9 725,652 - ydcJ JDDGAC_04140 0.42 +1.7 725,749 + ydcJ JDDGAC_04140 0.49 +0.6
Or see this region's nucleotide sequence