Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03890

Experiment: WM_JK45

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntompC2 and JDDGAC_03890 are separated by 168 nucleotidesJDDGAC_03890 and JDDGAC_03895 are separated by 122 nucleotidesJDDGAC_03895 and espR1 are separated by 62 nucleotides JDDGAC_03885: ompC2 - Outer membrane porin C 2, at 671,746 to 672,846 ompC2 JDDGAC_03890: JDDGAC_03890 - IpaH-like protein, at 673,015 to 673,518 _03890 JDDGAC_03895: JDDGAC_03895 - leucine Rich Repeat family protein, at 673,641 to 674,273 _03895 JDDGAC_03900: espR1 - T3SS effector leucine-rich repeat protein EspR1, at 674,336 to 675,595 espR1 Position (kb) 673 674Strain fitness (log2 ratio) -1 0 1at 672.082 kb on + strand, within ompC2at 672.130 kb on - strand, within ompC2at 672.184 kb on + strand, within ompC2at 672.453 kb on + strand, within ompC2at 672.506 kb on - strand, within ompC2at 672.637 kb on + strand, within ompC2

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK45
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672,082 + ompC2 JDDGAC_03885 0.31 +0.1
672,130 - ompC2 JDDGAC_03885 0.35 -1.0
672,184 + ompC2 JDDGAC_03885 0.40 +1.6
672,453 + ompC2 JDDGAC_03885 0.64 -0.9
672,506 - ompC2 JDDGAC_03885 0.69 -0.5
672,637 + ompC2 JDDGAC_03885 0.81 +1.7

Or see this region's nucleotide sequence