Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmC and bdm are separated by 344 nucleotides bdm and sra are separated by 101 nucleotides sra and maeA are separated by 156 nucleotides maeA and adhP are separated by 133 nucleotides
JDDGAC_03835: osmC - peroxiredoxin OsmC, at 660,898 to 661,329
osmC
JDDGAC_03840: bdm - biofilm-dependent modulation protein, at 661,674 to 661,889
bdm
JDDGAC_03845: sra - stationary-phase-induced ribosome-associated protein, at 661,991 to 662,128
sra
JDDGAC_03850: maeA - malate dehydrogenase, at 662,285 to 663,982
maeA
JDDGAC_03855: adhP - alcohol dehydrogenase AdhP, at 664,116 to 665,126
adhP
Position (kb) 662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2 at 661.529 kb on - strand at 661.857 kb on + strand, within bdm at 661.857 kb on + strand, within bdm at 661.880 kb on + strand at 661.887 kb on + strand at 661.926 kb on + strand at 661.987 kb on + strand at 662.017 kb on + strand, within sra at 662.017 kb on + strand, within sra at 662.035 kb on + strand, within sra at 662.062 kb on + strand, within sra at 662.126 kb on + strand at 662.158 kb on - strand at 662.205 kb on - strand at 662.205 kb on - strand at 662.340 kb on + strand at 662.549 kb on + strand, within maeA at 662.549 kb on + strand, within maeA at 662.590 kb on + strand, within maeA at 662.662 kb on + strand, within maeA at 662.663 kb on - strand, within maeA at 662.719 kb on + strand, within maeA at 662.849 kb on + strand, within maeA at 662.851 kb on + strand, within maeA at 662.851 kb on + strand, within maeA at 662.912 kb on + strand, within maeA at 662.912 kb on + strand, within maeA at 662.914 kb on + strand, within maeA at 662.915 kb on - strand, within maeA at 662.954 kb on + strand, within maeA at 663.252 kb on + strand, within maeA at 663.253 kb on - strand, within maeA at 663.644 kb on - strand, within maeA at 663.807 kb on + strand, within maeA at 663.819 kb on + strand at 663.819 kb on + strand at 663.820 kb on - strand at 664.086 kb on - strand at 664.115 kb on + strand at 664.116 kb on - strand at 664.222 kb on + strand, within adhP at 664.222 kb on + strand, within adhP at 664.223 kb on - strand, within adhP at 664.277 kb on - strand, within adhP at 664.544 kb on + strand, within adhP at 664.567 kb on - strand, within adhP at 664.613 kb on + strand, within adhP at 664.618 kb on - strand, within adhP at 664.618 kb on - strand, within adhP
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 661,529 - +0.5 661,857 + bdm JDDGAC_03840 0.85 -0.2 661,857 + bdm JDDGAC_03840 0.85 +0.3 661,880 + +0.3 661,887 + -0.7 661,926 + +0.5 661,987 + -0.2 662,017 + sra JDDGAC_03845 0.19 -2.1 662,017 + sra JDDGAC_03845 0.19 -0.8 662,035 + sra JDDGAC_03845 0.32 -1.0 662,062 + sra JDDGAC_03845 0.51 -1.6 662,126 + -1.2 662,158 - -0.4 662,205 - -1.3 662,205 - -1.0 662,340 + +0.0 662,549 + maeA JDDGAC_03850 0.16 -0.1 662,549 + maeA JDDGAC_03850 0.16 +0.3 662,590 + maeA JDDGAC_03850 0.18 +0.5 662,662 + maeA JDDGAC_03850 0.22 -1.8 662,663 - maeA JDDGAC_03850 0.22 -0.1 662,719 + maeA JDDGAC_03850 0.26 -0.0 662,849 + maeA JDDGAC_03850 0.33 +0.1 662,851 + maeA JDDGAC_03850 0.33 +1.6 662,851 + maeA JDDGAC_03850 0.33 +2.3 662,912 + maeA JDDGAC_03850 0.37 -1.2 662,912 + maeA JDDGAC_03850 0.37 -0.5 662,914 + maeA JDDGAC_03850 0.37 +1.6 662,915 - maeA JDDGAC_03850 0.37 -0.3 662,954 + maeA JDDGAC_03850 0.39 +0.5 663,252 + maeA JDDGAC_03850 0.57 -0.2 663,253 - maeA JDDGAC_03850 0.57 -0.8 663,644 - maeA JDDGAC_03850 0.80 +0.4 663,807 + maeA JDDGAC_03850 0.90 +1.7 663,819 + -0.0 663,819 + +0.8 663,820 - -0.3 664,086 - -1.1 664,115 + +0.2 664,116 - +0.1 664,222 + adhP JDDGAC_03855 0.10 +0.5 664,222 + adhP JDDGAC_03855 0.10 -1.7 664,223 - adhP JDDGAC_03855 0.11 +1.3 664,277 - adhP JDDGAC_03855 0.16 +0.1 664,544 + adhP JDDGAC_03855 0.42 +1.1 664,567 - adhP JDDGAC_03855 0.45 -0.3 664,613 + adhP JDDGAC_03855 0.49 +0.6 664,618 - adhP JDDGAC_03855 0.50 +1.1 664,618 - adhP JDDGAC_03855 0.50 +0.2
Or see this region's nucleotide sequence