Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgK and ydgT are separated by 85 nucleotides ydgT and blr are separated by 272 nucleotides blr and ydgJ are separated by 242 nucleotides ydgJ and add are separated by 35 nucleotides
JDDGAC_02150: ydgK - Inner membrane protein YdgK, at 385,232 to 385,672
ydgK
JDDGAC_02155: ydgT - transcription modulator YdgT, at 385,758 to 385,973
ydgT
JDDGAC_02160: blr - division septum protein Blr, at 386,246 to 386,371
blr
JDDGAC_02165: ydgJ - Uncharacterized oxidoreductase YdgJ, at 386,614 to 387,654
ydgJ
JDDGAC_02170: add - adenosine deaminase, at 387,690 to 388,691
add
Position (kb) 386
387
388 Strain fitness (log2 ratio) -1
0
1
2 at 385.672 kb on + strand at 385.673 kb on - strand at 385.673 kb on - strand at 385.673 kb on - strand at 385.673 kb on - strand at 385.673 kb on - strand at 385.715 kb on - strand at 385.729 kb on - strand at 385.729 kb on - strand at 385.769 kb on - strand at 385.856 kb on - strand, within ydgT at 385.859 kb on + strand, within ydgT at 385.860 kb on - strand, within ydgT at 385.860 kb on - strand, within ydgT at 385.974 kb on - strand at 385.985 kb on - strand at 386.057 kb on - strand at 386.248 kb on - strand at 386.248 kb on - strand at 386.403 kb on - strand at 386.416 kb on - strand at 386.435 kb on + strand at 386.512 kb on + strand at 386.518 kb on - strand at 386.592 kb on + strand at 386.592 kb on + strand at 386.826 kb on + strand, within ydgJ at 386.838 kb on + strand, within ydgJ at 387.052 kb on + strand, within ydgJ at 387.176 kb on + strand, within ydgJ at 387.203 kb on + strand, within ydgJ at 387.218 kb on + strand, within ydgJ at 387.327 kb on + strand, within ydgJ at 387.327 kb on + strand, within ydgJ at 387.352 kb on + strand, within ydgJ at 387.361 kb on + strand, within ydgJ at 387.446 kb on + strand, within ydgJ at 387.446 kb on + strand, within ydgJ at 387.517 kb on + strand, within ydgJ at 387.542 kb on + strand, within ydgJ at 387.819 kb on - strand, within add at 388.221 kb on + strand, within add at 388.412 kb on - strand, within add
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 385,672 + +0.7 385,673 - -0.8 385,673 - -0.6 385,673 - -1.4 385,673 - +1.1 385,673 - +0.8 385,715 - -1.0 385,729 - +2.0 385,729 - +0.5 385,769 - +1.1 385,856 - ydgT JDDGAC_02155 0.45 +0.0 385,859 + ydgT JDDGAC_02155 0.47 +1.5 385,860 - ydgT JDDGAC_02155 0.47 +0.0 385,860 - ydgT JDDGAC_02155 0.47 -0.1 385,974 - +0.2 385,985 - +1.2 386,057 - +0.4 386,248 - -0.7 386,248 - -0.1 386,403 - -0.5 386,416 - +0.4 386,435 + +0.7 386,512 + -0.1 386,518 - -0.1 386,592 + +0.2 386,592 + +1.9 386,826 + ydgJ JDDGAC_02165 0.20 -0.5 386,838 + ydgJ JDDGAC_02165 0.22 -0.6 387,052 + ydgJ JDDGAC_02165 0.42 -0.6 387,176 + ydgJ JDDGAC_02165 0.54 -1.5 387,203 + ydgJ JDDGAC_02165 0.57 +0.0 387,218 + ydgJ JDDGAC_02165 0.58 -0.3 387,327 + ydgJ JDDGAC_02165 0.68 -0.1 387,327 + ydgJ JDDGAC_02165 0.68 +0.9 387,352 + ydgJ JDDGAC_02165 0.71 -1.0 387,361 + ydgJ JDDGAC_02165 0.72 +1.2 387,446 + ydgJ JDDGAC_02165 0.80 -0.2 387,446 + ydgJ JDDGAC_02165 0.80 +0.8 387,517 + ydgJ JDDGAC_02165 0.87 +1.0 387,542 + ydgJ JDDGAC_02165 0.89 -1.1 387,819 - add JDDGAC_02170 0.13 +0.9 388,221 + add JDDGAC_02170 0.53 +1.4 388,412 - add JDDGAC_02170 0.72 -0.8
Or see this region's nucleotide sequence