Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01985

Experiment: WM_JK45

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpurR and ynhF are separated by 298 nucleotidesynhF and ydhP are separated by 165 nucleotides JDDGAC_01975: purR - HTH-type transcriptional repressor PurR, at 351,973 to 352,998 purR JDDGAC_01985: ynhF - stress response protein YnhF, at 353,297 to 353,386 ynhF JDDGAC_01990: ydhP - Inner membrane transport protein YdhP, at 353,552 to 354,721 ydhP Position (kb) 353 354Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 352.398 kb on + strand, within purRat 352.399 kb on - strand, within purRat 352.428 kb on + strand, within purRat 352.500 kb on - strand, within purRat 352.731 kb on - strand, within purRat 352.871 kb on - strand, within purRat 353.148 kb on - strandat 353.153 kb on - strandat 353.153 kb on - strandat 353.213 kb on + strandat 353.213 kb on + strandat 353.468 kb on + strandat 353.739 kb on + strand, within ydhPat 353.740 kb on - strand, within ydhPat 353.828 kb on + strand, within ydhPat 353.830 kb on + strand, within ydhPat 354.072 kb on + strand, within ydhPat 354.072 kb on + strand, within ydhPat 354.095 kb on - strand, within ydhPat 354.205 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.218 kb on + strand, within ydhPat 354.219 kb on - strand, within ydhPat 354.219 kb on - strand, within ydhPat 354.219 kb on - strand, within ydhPat 354.220 kb on + strand, within ydhPat 354.220 kb on + strand, within ydhPat 354.220 kb on + strand, within ydhPat 354.221 kb on - strand, within ydhPat 354.221 kb on - strand, within ydhPat 354.242 kb on - strand, within ydhP

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK45
remove
352,398 + purR JDDGAC_01975 0.41 +0.4
352,399 - purR JDDGAC_01975 0.42 +0.5
352,428 + purR JDDGAC_01975 0.44 +0.4
352,500 - purR JDDGAC_01975 0.51 +1.1
352,731 - purR JDDGAC_01975 0.74 +0.5
352,871 - purR JDDGAC_01975 0.88 +0.6
353,148 - +0.9
353,153 - +0.2
353,153 - -0.6
353,213 + +1.0
353,213 + -1.1
353,468 + +1.5
353,739 + ydhP JDDGAC_01990 0.16 +0.3
353,740 - ydhP JDDGAC_01990 0.16 +0.3
353,828 + ydhP JDDGAC_01990 0.24 +0.9
353,830 + ydhP JDDGAC_01990 0.24 +0.0
354,072 + ydhP JDDGAC_01990 0.44 -0.3
354,072 + ydhP JDDGAC_01990 0.44 +0.2
354,095 - ydhP JDDGAC_01990 0.46 -2.3
354,205 + ydhP JDDGAC_01990 0.56 -1.0
354,218 + ydhP JDDGAC_01990 0.57 -0.5
354,218 + ydhP JDDGAC_01990 0.57 -0.7
354,218 + ydhP JDDGAC_01990 0.57 -0.7
354,218 + ydhP JDDGAC_01990 0.57 -1.0
354,218 + ydhP JDDGAC_01990 0.57 -0.1
354,219 - ydhP JDDGAC_01990 0.57 -0.3
354,219 - ydhP JDDGAC_01990 0.57 +0.2
354,219 - ydhP JDDGAC_01990 0.57 -0.5
354,220 + ydhP JDDGAC_01990 0.57 -0.8
354,220 + ydhP JDDGAC_01990 0.57 -1.1
354,220 + ydhP JDDGAC_01990 0.57 -0.2
354,221 - ydhP JDDGAC_01990 0.57 -4.0
354,221 - ydhP JDDGAC_01990 0.57 +0.3
354,242 - ydhP JDDGAC_01990 0.59 -1.5

Or see this region's nucleotide sequence