Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeaL and yeaK are separated by 274 nucleotides yeaK and dgcJ are separated by 42 nucleotides dgcJ and cdgI are separated by 180 nucleotides
JDDGAC_01260: yeaL - UPF0756 membrane protein CKO_01811, at 212,836 to 213,282
yeaL
JDDGAC_01265: yeaK - mischarged aminoacyl-tRNA deacylase, at 213,557 to 214,060
yeaK
JDDGAC_01270: dgcJ - diguanylate cyclase DgcJ, at 214,103 to 215,593
dgcJ
JDDGAC_01275: cdgI - putative diguanylate cyclase CdgI, at 215,774 to 217,117
cdgI
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.222 kb on + strand, within yeaL at 213.222 kb on + strand, within yeaL at 213.317 kb on + strand at 213.322 kb on + strand at 213.323 kb on - strand at 213.433 kb on + strand at 213.433 kb on + strand at 213.554 kb on + strand at 213.555 kb on - strand at 213.805 kb on + strand, within yeaK at 213.806 kb on - strand, within yeaK at 213.892 kb on + strand, within yeaK at 213.897 kb on - strand, within yeaK at 213.897 kb on - strand, within yeaK at 213.908 kb on - strand, within yeaK at 213.908 kb on - strand, within yeaK at 213.921 kb on - strand, within yeaK at 213.958 kb on + strand, within yeaK at 213.963 kb on - strand, within yeaK at 214.138 kb on - strand at 214.140 kb on - strand at 214.173 kb on - strand at 214.351 kb on + strand, within dgcJ at 214.436 kb on + strand, within dgcJ at 214.460 kb on - strand, within dgcJ at 214.537 kb on - strand, within dgcJ at 214.737 kb on + strand, within dgcJ at 214.737 kb on + strand, within dgcJ at 214.985 kb on - strand, within dgcJ at 215.029 kb on + strand, within dgcJ at 215.103 kb on + strand, within dgcJ at 215.167 kb on - strand, within dgcJ at 215.217 kb on - strand, within dgcJ at 215.286 kb on + strand, within dgcJ at 215.287 kb on - strand, within dgcJ at 215.434 kb on + strand, within dgcJ at 215.473 kb on - strand at 215.522 kb on - strand at 215.672 kb on + strand at 215.673 kb on - strand at 215.716 kb on + strand at 215.717 kb on - strand at 215.775 kb on + strand at 215.864 kb on - strand at 215.926 kb on - strand, within cdgI at 215.926 kb on - strand, within cdgI at 215.969 kb on - strand, within cdgI at 216.364 kb on - strand, within cdgI at 216.432 kb on - strand, within cdgI at 216.567 kb on + strand, within cdgI
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 213,222 + yeaL JDDGAC_01260 0.86 -1.4 213,222 + yeaL JDDGAC_01260 0.86 +2.4 213,317 + -0.3 213,322 + -0.1 213,323 - +1.1 213,433 + +2.2 213,433 + -1.8 213,554 + -1.0 213,555 - -0.1 213,805 + yeaK JDDGAC_01265 0.49 -1.1 213,806 - yeaK JDDGAC_01265 0.49 +1.6 213,892 + yeaK JDDGAC_01265 0.66 +1.7 213,897 - yeaK JDDGAC_01265 0.67 +1.1 213,897 - yeaK JDDGAC_01265 0.67 +0.0 213,908 - yeaK JDDGAC_01265 0.70 +0.7 213,908 - yeaK JDDGAC_01265 0.70 -0.0 213,921 - yeaK JDDGAC_01265 0.72 -0.4 213,958 + yeaK JDDGAC_01265 0.80 +0.7 213,963 - yeaK JDDGAC_01265 0.81 -1.9 214,138 - -0.6 214,140 - -0.0 214,173 - -0.5 214,351 + dgcJ JDDGAC_01270 0.17 -0.5 214,436 + dgcJ JDDGAC_01270 0.22 +1.0 214,460 - dgcJ JDDGAC_01270 0.24 +0.9 214,537 - dgcJ JDDGAC_01270 0.29 -1.7 214,737 + dgcJ JDDGAC_01270 0.43 -0.4 214,737 + dgcJ JDDGAC_01270 0.43 -0.1 214,985 - dgcJ JDDGAC_01270 0.59 -1.0 215,029 + dgcJ JDDGAC_01270 0.62 +0.5 215,103 + dgcJ JDDGAC_01270 0.67 +0.2 215,167 - dgcJ JDDGAC_01270 0.71 -0.8 215,217 - dgcJ JDDGAC_01270 0.75 +1.7 215,286 + dgcJ JDDGAC_01270 0.79 +0.4 215,287 - dgcJ JDDGAC_01270 0.79 -0.1 215,434 + dgcJ JDDGAC_01270 0.89 +0.5 215,473 - -1.9 215,522 - -0.5 215,672 + -0.6 215,673 - +0.6 215,716 + +0.0 215,717 - -0.0 215,775 + +2.0 215,864 - +0.1 215,926 - cdgI JDDGAC_01275 0.11 -1.1 215,926 - cdgI JDDGAC_01275 0.11 -1.3 215,969 - cdgI JDDGAC_01275 0.15 -1.1 216,364 - cdgI JDDGAC_01275 0.44 -0.8 216,432 - cdgI JDDGAC_01275 0.49 +1.3 216,567 + cdgI JDDGAC_01275 0.59 -0.3
Or see this region's nucleotide sequence