Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28265 and yegQ are separated by 329 nucleotides yegQ and yegP are separated by 147 nucleotides yegP and baeR are separated by 190 nucleotides
JDDGAC_28265: JDDGAC_28265 - Uncharacterized protein YegR, at 5,416,126 to 5,416,443
_28265
JDDGAC_28275: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 5,416,773 to 5,418,134
yegQ
JDDGAC_28280: yegP - UPF0339 protein YegP, at 5,418,282 to 5,418,614
yegP
JDDGAC_28285: baeR - two-component system response regulator BaeR, at 5,418,805 to 5,419,527
baeR
Position (kb) 5416
5417
5418
5419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5415.915 kb on - strand at 5415.918 kb on + strand at 5415.948 kb on + strand at 5416.089 kb on + strand at 5416.261 kb on + strand, within JDDGAC_28265 at 5416.301 kb on + strand, within JDDGAC_28265 at 5416.403 kb on + strand, within JDDGAC_28265 at 5416.538 kb on + strand at 5416.539 kb on - strand at 5416.553 kb on + strand at 5416.595 kb on + strand at 5416.595 kb on + strand at 5416.595 kb on + strand at 5416.629 kb on - strand at 5416.661 kb on + strand at 5416.872 kb on - strand at 5416.899 kb on - strand at 5416.899 kb on - strand at 5416.935 kb on - strand, within yegQ at 5417.108 kb on + strand, within yegQ at 5417.135 kb on - strand, within yegQ at 5417.245 kb on + strand, within yegQ at 5417.311 kb on - strand, within yegQ at 5417.350 kb on + strand, within yegQ at 5417.350 kb on + strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.382 kb on - strand, within yegQ at 5417.383 kb on + strand, within yegQ at 5417.384 kb on - strand, within yegQ at 5417.482 kb on + strand, within yegQ at 5417.490 kb on + strand, within yegQ at 5417.534 kb on - strand, within yegQ at 5417.852 kb on + strand, within yegQ at 5418.053 kb on - strand at 5418.070 kb on + strand at 5418.071 kb on - strand at 5418.135 kb on - strand at 5418.228 kb on + strand at 5418.280 kb on - strand at 5418.280 kb on - strand at 5418.284 kb on - strand at 5418.364 kb on + strand, within yegP at 5418.364 kb on + strand, within yegP at 5418.364 kb on + strand, within yegP at 5418.364 kb on + strand, within yegP at 5418.365 kb on - strand, within yegP at 5418.365 kb on - strand, within yegP at 5418.365 kb on - strand, within yegP at 5418.515 kb on + strand, within yegP at 5418.516 kb on - strand, within yegP at 5418.517 kb on + strand, within yegP at 5418.517 kb on + strand, within yegP at 5418.518 kb on - strand, within yegP at 5418.518 kb on - strand, within yegP at 5418.579 kb on - strand, within yegP at 5418.614 kb on + strand at 5418.615 kb on - strand at 5418.655 kb on + strand at 5418.655 kb on + strand at 5418.655 kb on + strand at 5418.655 kb on + strand at 5418.865 kb on - strand at 5418.865 kb on - strand at 5418.944 kb on - strand, within baeR
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 5,415,915 - +0.4 5,415,918 + -0.2 5,415,948 + +0.7 5,416,089 + +0.0 5,416,261 + JDDGAC_28265 0.42 +0.7 5,416,301 + JDDGAC_28265 0.55 -2.9 5,416,403 + JDDGAC_28265 0.87 -1.3 5,416,538 + +2.2 5,416,539 - -1.2 5,416,553 + +1.3 5,416,595 + +2.4 5,416,595 + +0.2 5,416,595 + -0.8 5,416,629 - -0.4 5,416,661 + -0.1 5,416,872 - -1.4 5,416,899 - -2.7 5,416,899 - -0.8 5,416,935 - yegQ JDDGAC_28275 0.12 +0.6 5,417,108 + yegQ JDDGAC_28275 0.25 +0.5 5,417,135 - yegQ JDDGAC_28275 0.27 -0.1 5,417,245 + yegQ JDDGAC_28275 0.35 +2.2 5,417,311 - yegQ JDDGAC_28275 0.40 +1.7 5,417,350 + yegQ JDDGAC_28275 0.42 -1.0 5,417,350 + yegQ JDDGAC_28275 0.42 +0.8 5,417,351 - yegQ JDDGAC_28275 0.42 -0.6 5,417,351 - yegQ JDDGAC_28275 0.42 -1.6 5,417,351 - yegQ JDDGAC_28275 0.42 +0.6 5,417,351 - yegQ JDDGAC_28275 0.42 -0.0 5,417,351 - yegQ JDDGAC_28275 0.42 -0.2 5,417,351 - yegQ JDDGAC_28275 0.42 +1.0 5,417,382 - yegQ JDDGAC_28275 0.45 +0.4 5,417,383 + yegQ JDDGAC_28275 0.45 -2.3 5,417,384 - yegQ JDDGAC_28275 0.45 -0.2 5,417,482 + yegQ JDDGAC_28275 0.52 -0.9 5,417,490 + yegQ JDDGAC_28275 0.53 +0.8 5,417,534 - yegQ JDDGAC_28275 0.56 -0.1 5,417,852 + yegQ JDDGAC_28275 0.79 -0.9 5,418,053 - -0.9 5,418,070 + -0.3 5,418,071 - +1.6 5,418,135 - -1.0 5,418,228 + +1.6 5,418,280 - +0.2 5,418,280 - -0.6 5,418,284 - +1.3 5,418,364 + yegP JDDGAC_28280 0.25 +0.9 5,418,364 + yegP JDDGAC_28280 0.25 -0.2 5,418,364 + yegP JDDGAC_28280 0.25 -2.2 5,418,364 + yegP JDDGAC_28280 0.25 -0.5 5,418,365 - yegP JDDGAC_28280 0.25 +0.6 5,418,365 - yegP JDDGAC_28280 0.25 -0.7 5,418,365 - yegP JDDGAC_28280 0.25 +1.9 5,418,515 + yegP JDDGAC_28280 0.70 -1.9 5,418,516 - yegP JDDGAC_28280 0.70 +0.3 5,418,517 + yegP JDDGAC_28280 0.71 -0.1 5,418,517 + yegP JDDGAC_28280 0.71 -0.0 5,418,518 - yegP JDDGAC_28280 0.71 -0.0 5,418,518 - yegP JDDGAC_28280 0.71 +0.8 5,418,579 - yegP JDDGAC_28280 0.89 -1.6 5,418,614 + +1.8 5,418,615 - +0.8 5,418,655 + +1.7 5,418,655 + -0.4 5,418,655 + -0.2 5,418,655 + -0.0 5,418,865 - -0.1 5,418,865 - +0.4 5,418,944 - baeR JDDGAC_28285 0.19 -2.7
Or see this region's nucleotide sequence