Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_27665 and JDDGAC_27670 overlap by 4 nucleotides JDDGAC_27670 and JDDGAC_27675 are separated by 333 nucleotides JDDGAC_27675 and JDDGAC_27680 are separated by 1 nucleotides JDDGAC_27680 and JDDGAC_27685 overlap by 4 nucleotides JDDGAC_27685 and JDDGAC_27690 are separated by 98 nucleotides JDDGAC_27690 and JDDGAC_27695 overlap by 4 nucleotides JDDGAC_27695 and JDDGAC_27700 overlap by 4 nucleotides JDDGAC_27700 and JDDGAC_27705 overlap by 28 nucleotides JDDGAC_27705 and exoD overlap by 1 nucleotides
JDDGAC_27665: JDDGAC_27665 - DUF551 domain-containing protein, at 5,319,156 to 5,319,518
_27665
JDDGAC_27670: JDDGAC_27670 - Phage protein, at 5,319,515 to 5,319,871
_27670
JDDGAC_27675: JDDGAC_27675 - hypothetical protein, at 5,320,205 to 5,320,381
_27675
JDDGAC_27680: JDDGAC_27680 - Ead/Ea22-like protein, at 5,320,383 to 5,321,330
_27680
JDDGAC_27685: JDDGAC_27685 - conjugal transfer protein TraR, at 5,321,327 to 5,321,548
_27685
JDDGAC_27690: JDDGAC_27690 - Cell division protein ZapA, at 5,321,647 to 5,321,862
_27690
JDDGAC_27695: JDDGAC_27695 - DUF1382 domain-containing protein, at 5,321,859 to 5,321,942
_27695
JDDGAC_27700: JDDGAC_27700 - DUF1382 domain-containing protein, at 5,321,939 to 5,322,130
_27700
JDDGAC_27705: JDDGAC_27705 - cruciferin, at 5,322,103 to 5,322,285
_27705
JDDGAC_27710: exoD - Putative uncharacterized protein ExoD, at 5,322,285 to 5,322,962
exoD
Position (kb) 5320
5321
5322 Strain fitness (log2 ratio) -1
0
1 at 5321.163 kb on - strand, within JDDGAC_27680 at 5321.163 kb on - strand, within JDDGAC_27680 at 5322.130 kb on + strand at 5322.147 kb on + strand, within JDDGAC_27705 at 5322.148 kb on - strand, within JDDGAC_27705 at 5322.286 kb on + strand at 5322.304 kb on - strand at 5322.304 kb on - strand at 5322.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 5,321,163 - JDDGAC_27680 0.82 +0.7 5,321,163 - JDDGAC_27680 0.82 +0.1 5,322,130 + +0.8 5,322,147 + JDDGAC_27705 0.24 +1.1 5,322,148 - JDDGAC_27705 0.25 +0.7 5,322,286 + -0.4 5,322,304 - +0.7 5,322,304 - -0.5 5,322,304 - +1.4
Or see this region's nucleotide sequence