Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt garR and garK are separated by 96 nucleotides garK and JDDGAC_22015 are separated by 515 nucleotides
JDDGAC_22000: garR - 2-hydroxy-3-oxopropionate reductase, at 4,206,092 to 4,206,982
garR
JDDGAC_22005: garK - glycerate 2-kinase, at 4,207,079 to 4,208,224
garK
JDDGAC_22015: JDDGAC_22015 - YhaC family protein, at 4,208,740 to 4,209,927
_22015
Position (kb) 4207
4208
4209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4206.091 kb on + strand at 4206.091 kb on + strand at 4206.091 kb on + strand at 4206.092 kb on - strand at 4206.112 kb on + strand at 4206.145 kb on + strand at 4206.203 kb on - strand, within garR at 4206.203 kb on - strand, within garR at 4206.440 kb on - strand, within garR at 4206.505 kb on - strand, within garR at 4206.533 kb on + strand, within garR at 4206.534 kb on - strand, within garR at 4206.536 kb on + strand, within garR at 4206.536 kb on + strand, within garR at 4206.595 kb on + strand, within garR at 4206.596 kb on - strand, within garR at 4206.674 kb on - strand, within garR at 4206.733 kb on + strand, within garR at 4206.734 kb on - strand, within garR at 4206.805 kb on + strand, within garR at 4206.805 kb on + strand, within garR at 4206.806 kb on - strand, within garR at 4206.808 kb on + strand, within garR at 4206.809 kb on - strand, within garR at 4206.832 kb on + strand, within garR at 4206.912 kb on + strand at 4206.929 kb on - strand at 4207.004 kb on + strand at 4207.005 kb on - strand at 4207.037 kb on - strand at 4207.074 kb on + strand at 4207.074 kb on + strand at 4207.074 kb on + strand at 4207.074 kb on + strand at 4207.074 kb on + strand at 4207.075 kb on - strand at 4207.078 kb on + strand at 4207.079 kb on - strand at 4207.106 kb on + strand at 4207.146 kb on + strand at 4207.184 kb on + strand at 4207.274 kb on - strand, within garK at 4207.339 kb on + strand, within garK at 4207.466 kb on - strand, within garK at 4207.515 kb on + strand, within garK at 4207.515 kb on + strand, within garK at 4207.576 kb on + strand, within garK at 4207.582 kb on + strand, within garK at 4207.583 kb on - strand, within garK at 4207.583 kb on - strand, within garK at 4207.585 kb on + strand, within garK at 4207.921 kb on + strand, within garK at 4207.922 kb on - strand, within garK at 4207.922 kb on - strand, within garK at 4207.934 kb on - strand, within garK at 4207.975 kb on + strand, within garK at 4208.021 kb on + strand, within garK at 4208.026 kb on + strand, within garK at 4208.027 kb on - strand, within garK at 4208.077 kb on - strand, within garK at 4208.110 kb on - strand at 4208.121 kb on + strand at 4208.121 kb on + strand at 4208.121 kb on + strand at 4208.121 kb on + strand at 4208.122 kb on - strand at 4208.122 kb on - strand at 4208.125 kb on + strand at 4208.125 kb on + strand at 4208.125 kb on + strand at 4208.126 kb on - strand at 4208.153 kb on + strand at 4208.161 kb on + strand at 4208.162 kb on - strand at 4208.712 kb on + strand at 4208.713 kb on - strand at 4208.809 kb on - strand at 4208.884 kb on - strand, within JDDGAC_22015
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 4,206,091 + +0.4 4,206,091 + -1.9 4,206,091 + -0.6 4,206,092 - -0.1 4,206,112 + +1.7 4,206,145 + -0.1 4,206,203 - garR JDDGAC_22000 0.12 +0.5 4,206,203 - garR JDDGAC_22000 0.12 -0.1 4,206,440 - garR JDDGAC_22000 0.39 -0.9 4,206,505 - garR JDDGAC_22000 0.46 -0.6 4,206,533 + garR JDDGAC_22000 0.49 -0.2 4,206,534 - garR JDDGAC_22000 0.50 +1.0 4,206,536 + garR JDDGAC_22000 0.50 -0.7 4,206,536 + garR JDDGAC_22000 0.50 -0.8 4,206,595 + garR JDDGAC_22000 0.56 +1.6 4,206,596 - garR JDDGAC_22000 0.57 +0.1 4,206,674 - garR JDDGAC_22000 0.65 +0.3 4,206,733 + garR JDDGAC_22000 0.72 -0.1 4,206,734 - garR JDDGAC_22000 0.72 -1.1 4,206,805 + garR JDDGAC_22000 0.80 -1.3 4,206,805 + garR JDDGAC_22000 0.80 -1.2 4,206,806 - garR JDDGAC_22000 0.80 -0.5 4,206,808 + garR JDDGAC_22000 0.80 -0.3 4,206,809 - garR JDDGAC_22000 0.80 -0.4 4,206,832 + garR JDDGAC_22000 0.83 -1.3 4,206,912 + +0.6 4,206,929 - +0.8 4,207,004 + +0.7 4,207,005 - +0.3 4,207,037 - +2.4 4,207,074 + -0.6 4,207,074 + -0.9 4,207,074 + +0.1 4,207,074 + +0.1 4,207,074 + +0.7 4,207,075 - -0.3 4,207,078 + -1.3 4,207,079 - -1.8 4,207,106 + -0.6 4,207,146 + +1.0 4,207,184 + -0.2 4,207,274 - garK JDDGAC_22005 0.17 +1.2 4,207,339 + garK JDDGAC_22005 0.23 +1.2 4,207,466 - garK JDDGAC_22005 0.34 -0.3 4,207,515 + garK JDDGAC_22005 0.38 -0.0 4,207,515 + garK JDDGAC_22005 0.38 +1.1 4,207,576 + garK JDDGAC_22005 0.43 -1.4 4,207,582 + garK JDDGAC_22005 0.44 +0.1 4,207,583 - garK JDDGAC_22005 0.44 +0.7 4,207,583 - garK JDDGAC_22005 0.44 -0.9 4,207,585 + garK JDDGAC_22005 0.44 -0.1 4,207,921 + garK JDDGAC_22005 0.73 +1.4 4,207,922 - garK JDDGAC_22005 0.74 +2.4 4,207,922 - garK JDDGAC_22005 0.74 +0.4 4,207,934 - garK JDDGAC_22005 0.75 +0.2 4,207,975 + garK JDDGAC_22005 0.78 +0.9 4,208,021 + garK JDDGAC_22005 0.82 -0.9 4,208,026 + garK JDDGAC_22005 0.83 +0.4 4,208,027 - garK JDDGAC_22005 0.83 -3.0 4,208,077 - garK JDDGAC_22005 0.87 -0.2 4,208,110 - +0.7 4,208,121 + -0.7 4,208,121 + +0.2 4,208,121 + -0.9 4,208,121 + -0.7 4,208,122 - -0.2 4,208,122 - +2.0 4,208,125 + -1.0 4,208,125 + -0.3 4,208,125 + -4.4 4,208,126 - +0.1 4,208,153 + -0.5 4,208,161 + -0.7 4,208,162 - +2.2 4,208,712 + -1.0 4,208,713 - +0.4 4,208,809 - +0.1 4,208,884 - JDDGAC_22015 0.12 +0.9
Or see this region's nucleotide sequence