Strain Fitness in Escherichia coli ECRC98 around JDDGAC_17805

Experiment: WM_Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas09
3,378,782	-	srkA	JDDGAC_17800	0.16	-2.2
3,378,857	-	srkA	JDDGAC_17800	0.24	-0.3
3,378,857	-	srkA	JDDGAC_17800	0.24	+1.3
3,378,870	-	srkA	JDDGAC_17800	0.25	-0.2
3,378,944	+	srkA	JDDGAC_17800	0.32	-0.0
3,378,945	-	srkA	JDDGAC_17800	0.33	+0.3
3,378,945	-	srkA	JDDGAC_17800	0.33	+1.0
3,379,055	+	srkA	JDDGAC_17800	0.44	-0.4
3,379,114	-	srkA	JDDGAC_17800	0.50	-0.7
3,379,121	+	srkA	JDDGAC_17800	0.50	-1.1
3,379,121	+	srkA	JDDGAC_17800	0.50	+0.9
3,379,122	-	srkA	JDDGAC_17800	0.50	-0.7
3,379,156	+	srkA	JDDGAC_17800	0.54	+0.1
3,379,156	+	srkA	JDDGAC_17800	0.54	+0.3
3,379,156	+	srkA	JDDGAC_17800	0.54	+2.3
3,379,188	-	srkA	JDDGAC_17800	0.57	+1.1
3,379,217	+	srkA	JDDGAC_17800	0.60	+0.9
3,379,257	-	srkA	JDDGAC_17800	0.64	+1.3
3,379,259	+	srkA	JDDGAC_17800	0.64	+0.6
3,379,260	-	srkA	JDDGAC_17800	0.64	+0.6
3,379,327	-	srkA	JDDGAC_17800	0.71	+0.6
3,379,378	-	srkA	JDDGAC_17800	0.76	-0.4
3,379,442	-	srkA	JDDGAC_17800	0.83	+0.2
3,379,486	+	srkA	JDDGAC_17800	0.87	-0.0
3,379,487	-	srkA	JDDGAC_17800	0.87	-0.0
3,379,501	+	srkA	JDDGAC_17800	0.89	-0.1
3,379,517	+				+0.2
3,379,518	-				+0.4
3,379,593	-				-1.4
3,379,593	-				-0.0
3,379,631	-				-1.2
3,379,678	+				+0.3
3,379,688	+				-1.8
3,379,695	+				-2.3
3,379,696	-				+0.8
3,379,714	+	yihD	JDDGAC_17805	0.10	+0.7
3,379,742	+	yihD	JDDGAC_17805	0.20	+1.1
3,379,742	+	yihD	JDDGAC_17805	0.20	-0.8
3,379,887	+	yihD	JDDGAC_17805	0.74	-1.0
3,379,957	-				-0.5
3,379,959	+				-1.0
3,379,959	+				-1.0
3,379,960	-				-1.6
3,379,960	-				+1.4
3,379,969	+				+0.1
3,379,970	-				-2.9
3,379,970	-				+1.3
3,380,114	+	mobA	JDDGAC_17810	0.15	-1.0
3,380,115	-	mobA	JDDGAC_17810	0.15	+0.6
3,380,155	-	mobA	JDDGAC_17810	0.22	-2.8
3,380,181	+	mobA	JDDGAC_17810	0.26	+0.7
3,380,188	-	mobA	JDDGAC_17810	0.28	+1.8
3,380,188	-	mobA	JDDGAC_17810	0.28	-0.1
3,380,329	-	mobA	JDDGAC_17810	0.52	-1.6
3,380,336	-	mobA	JDDGAC_17810	0.53	+0.8
3,380,352	-	mobA	JDDGAC_17810	0.56	-1.2
3,380,364	+	mobA	JDDGAC_17810	0.58	-0.2
3,380,365	-	mobA	JDDGAC_17810	0.58	+1.0
3,380,427	+	mobA	JDDGAC_17810	0.69	+0.5
3,380,438	+	mobA	JDDGAC_17810	0.70	+0.2
3,380,438	+	mobA	JDDGAC_17810	0.70	+0.5
3,380,439	-	mobA	JDDGAC_17810	0.71	-1.5
3,380,459	+	mobA	JDDGAC_17810	0.74	-0.7
3,380,462	+	mobA	JDDGAC_17810	0.75	-0.4
3,380,470	+	mobA	JDDGAC_17810	0.76	+1.7
3,380,505	+	mobA	JDDGAC_17810	0.82	+0.2
3,380,505	+	mobA	JDDGAC_17810	0.82	+0.8
3,380,506	-	mobA	JDDGAC_17810	0.82	-0.2
3,380,547	+	mobA	JDDGAC_17810	0.89	+0.0
3,380,547	+	mobA	JDDGAC_17810	0.89	-1.6
3,380,548	-	mobA	JDDGAC_17810	0.89	-0.2
3,380,612	-				+0.7
3,380,655	-	mobB	JDDGAC_17815	0.12	+0.1
3,380,684	-	mobB	JDDGAC_17815	0.17	-1.5
3,380,720	+	mobB	JDDGAC_17815	0.24	-0.7
3,380,720	+	mobB	JDDGAC_17815	0.24	-0.2
3,380,744	+	mobB	JDDGAC_17815	0.29	+0.7
3,380,760	-	mobB	JDDGAC_17815	0.32	-0.6
3,380,760	-	mobB	JDDGAC_17815	0.32	+1.9
3,380,760	-	mobB	JDDGAC_17815	0.32	+0.0
3,380,760	-	mobB	JDDGAC_17815	0.32	-1.1
3,380,760	-	mobB	JDDGAC_17815	0.32	+1.0
3,380,763	+	mobB	JDDGAC_17815	0.32	-0.5
3,380,764	-	mobB	JDDGAC_17815	0.33	+0.1
3,380,764	-	mobB	JDDGAC_17815	0.33	+0.1
3,380,922	-	mobB	JDDGAC_17815	0.62	+0.3
3,380,922	-	mobB	JDDGAC_17815	0.62	+0.7