Strain Fitness in Escherichia coli ECRC98 around JDDGAC_16815

Experiment: WM_Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas09
3,171,240	+	lysC	JDDGAC_16805	0.75	-2.4
3,171,240	+	lysC	JDDGAC_16805	0.75	+0.5
3,171,240	+	lysC	JDDGAC_16805	0.75	-0.3
3,171,240	+	lysC	JDDGAC_16805	0.75	-1.1
3,171,254	+	lysC	JDDGAC_16805	0.76	-0.2
3,171,255	-	lysC	JDDGAC_16805	0.76	+1.0
3,171,295	-	lysC	JDDGAC_16805	0.79	-0.4
3,171,449	+				+1.9
3,171,564	+				+0.2
3,171,567	+				+0.3
3,171,568	-				-1.0
3,171,581	-				-0.8
3,171,585	-				+0.6
3,171,585	-				+0.3
3,171,590	-				-3.1
3,171,590	-				+0.4
3,171,603	+				+1.2
3,171,603	+				+0.6
3,171,603	+				-0.3
3,171,635	+				-0.9
3,171,636	-				+0.8
3,171,647	+				-0.1
3,171,659	+				+0.5
3,171,690	+				+0.1
3,171,691	-				-0.3
3,171,691	-				+0.2
3,171,700	+				-0.9
3,171,725	+				-0.6
3,171,725	+				+0.7
3,171,726	-				+2.1
3,171,742	-				-0.4
3,171,745	+				-1.9
3,171,746	-				+0.7
3,171,746	-				-0.8
3,171,746	-				+1.0
3,171,750	-				+1.1
3,171,769	-				-1.3
3,171,853	-				+0.2
3,171,932	+	yjbD	JDDGAC_16810	0.36	-0.9
3,171,960	+	yjbD	JDDGAC_16810	0.46	-1.0
3,171,960	+	yjbD	JDDGAC_16810	0.46	+0.0
3,171,960	+	yjbD	JDDGAC_16810	0.46	+0.6
3,171,961	-	yjbD	JDDGAC_16810	0.46	+0.1
3,171,970	+	yjbD	JDDGAC_16810	0.49	-0.2
3,171,970	+	yjbD	JDDGAC_16810	0.49	-1.1
3,171,970	+	yjbD	JDDGAC_16810	0.49	+0.6
3,171,971	-	yjbD	JDDGAC_16810	0.50	+0.2
3,171,983	+	yjbD	JDDGAC_16810	0.54	+1.0
3,172,042	+	yjbD	JDDGAC_16810	0.76	+1.9
3,172,043	-	yjbD	JDDGAC_16810	0.76	+1.0
3,172,043	-	yjbD	JDDGAC_16810	0.76	-0.5
3,172,043	-	yjbD	JDDGAC_16810	0.76	-1.4
3,172,045	-	yjbD	JDDGAC_16810	0.77	-0.1
3,172,045	-	yjbD	JDDGAC_16810	0.77	+0.1
3,172,045	-	yjbD	JDDGAC_16810	0.77	-0.8
3,172,068	+	yjbD	JDDGAC_16810	0.85	+0.3
3,172,068	+	yjbD	JDDGAC_16810	0.85	-0.0
3,172,069	-	yjbD	JDDGAC_16810	0.86	-0.5
3,172,282	-	rluF	JDDGAC_16815	0.20	-0.7
3,172,282	-	rluF	JDDGAC_16815	0.20	-0.1
3,172,282	-	rluF	JDDGAC_16815	0.20	-0.1
3,172,294	+	rluF	JDDGAC_16815	0.21	-1.8
3,172,366	-	rluF	JDDGAC_16815	0.30	-0.0
3,172,571	+	rluF	JDDGAC_16815	0.53	+0.1
3,172,571	+	rluF	JDDGAC_16815	0.53	-0.2
3,172,572	-	rluF	JDDGAC_16815	0.53	+1.5
3,172,608	+	rluF	JDDGAC_16815	0.57	+0.3
3,172,609	-	rluF	JDDGAC_16815	0.57	-0.1
3,172,609	-	rluF	JDDGAC_16815	0.57	-0.7
3,172,609	-	rluF	JDDGAC_16815	0.57	+1.1
3,172,717	-	rluF	JDDGAC_16815	0.70	+0.3
3,172,774	-	rluF	JDDGAC_16815	0.76	-0.5
3,172,774	-	rluF	JDDGAC_16815	0.76	-0.5
3,172,820	-	rluF	JDDGAC_16815	0.82	-0.5
3,172,876	-	rluF	JDDGAC_16815	0.88	-0.9
3,172,947	-				+0.2
3,172,947	-				+0.5
3,172,950	+				+0.8
3,172,951	-				-2.0
3,172,992	+				+0.9
3,173,007	-				-1.7
3,173,007	-				-1.6
3,173,011	+				+0.4
3,173,012	-				-0.4
3,173,057	-				+1.0
3,173,080	-				+0.2
3,173,102	+				+0.4
3,173,143	-				-0.3
3,173,175	+				+0.5
3,173,176	-				-0.2
3,173,267	+				-0.3
3,173,267	+				-1.2
3,173,268	-				-0.4
3,173,268	-				+0.8
3,173,268	-				-2.1
3,173,268	-				+0.9
3,173,269	+				+0.5
3,173,270	-				+0.1
3,173,295	-				+0.2
3,173,295	-				-0.2
3,173,376	+				-2.0
3,173,377	-				+0.2
3,173,423	+	deoR	JDDGAC_16820	0.10	-0.2
3,173,496	+	deoR	JDDGAC_16820	0.18	+0.1
3,173,497	-	deoR	JDDGAC_16820	0.18	-1.0
3,173,497	-	deoR	JDDGAC_16820	0.18	-0.4
3,173,497	-	deoR	JDDGAC_16820	0.18	+0.4
3,173,502	+	deoR	JDDGAC_16820	0.18	+1.0
3,173,618	-	deoR	JDDGAC_16820	0.31	+0.3
3,173,737	+	deoR	JDDGAC_16820	0.43	-0.4
3,173,794	+	deoR	JDDGAC_16820	0.49	-0.1
3,173,794	+	deoR	JDDGAC_16820	0.49	-0.0
3,173,795	-	deoR	JDDGAC_16820	0.49	+0.4
3,173,804	-	deoR	JDDGAC_16820	0.50	+0.4
3,173,808	+	deoR	JDDGAC_16820	0.51	+1.5
3,173,808	+	deoR	JDDGAC_16820	0.51	-1.4
3,173,809	-	deoR	JDDGAC_16820	0.51	+0.4
3,173,809	-	deoR	JDDGAC_16820	0.51	+1.3