Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_05505 and JDDGAC_05510 are separated by 71 nucleotides JDDGAC_05510 and JDDGAC_05515 are separated by 2 nucleotides JDDGAC_05515 and JDDGAC_05520 are separated by 12 nucleotides JDDGAC_05520 and JDDGAC_05525 are separated by 1 nucleotides JDDGAC_05525 and JDDGAC_05530 overlap by 4 nucleotides
JDDGAC_05505: JDDGAC_05505 - transposase, at 968,289 to 970,379
_05505
JDDGAC_05510: JDDGAC_05510 - transcriptional regulator, at 970,451 to 971,383
_05510
JDDGAC_05515: JDDGAC_05515 - hypothetical protein, at 971,386 to 971,607
_05515
JDDGAC_05520: JDDGAC_05520 - hypothetical protein, at 971,620 to 971,874
_05520
JDDGAC_05525: JDDGAC_05525 - host nuclease inhibitor protein, at 971,876 to 972,157
_05525
JDDGAC_05530: JDDGAC_05530 - hypothetical protein, at 972,154 to 972,426
_05530
Position (kb) 970
971
972 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.539 kb on + strand, within JDDGAC_05505 at 969.582 kb on + strand, within JDDGAC_05505 at 969.582 kb on + strand, within JDDGAC_05505 at 969.782 kb on - strand, within JDDGAC_05505 at 969.934 kb on + strand, within JDDGAC_05505 at 969.989 kb on + strand, within JDDGAC_05505 at 970.240 kb on + strand at 970.447 kb on + strand at 970.448 kb on - strand at 970.450 kb on + strand at 970.459 kb on + strand at 970.581 kb on - strand, within JDDGAC_05510 at 970.769 kb on - strand, within JDDGAC_05510 at 970.791 kb on - strand, within JDDGAC_05510 at 970.892 kb on + strand, within JDDGAC_05510 at 971.050 kb on + strand, within JDDGAC_05510 at 971.050 kb on + strand, within JDDGAC_05510 at 971.051 kb on - strand, within JDDGAC_05510 at 971.266 kb on + strand, within JDDGAC_05510 at 971.266 kb on + strand, within JDDGAC_05510 at 971.330 kb on - strand at 971.386 kb on - strand at 971.401 kb on - strand at 971.618 kb on - strand at 971.625 kb on + strand at 971.958 kb on + strand, within JDDGAC_05525 at 972.184 kb on + strand, within JDDGAC_05530 at 972.248 kb on + strand, within JDDGAC_05530
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 969,539 + JDDGAC_05505 0.60 -0.0 969,582 + JDDGAC_05505 0.62 -0.3 969,582 + JDDGAC_05505 0.62 -1.8 969,782 - JDDGAC_05505 0.71 -0.9 969,934 + JDDGAC_05505 0.79 -0.9 969,989 + JDDGAC_05505 0.81 +2.0 970,240 + +1.7 970,447 + -0.0 970,448 - -1.0 970,450 + -0.7 970,459 + +0.3 970,581 - JDDGAC_05510 0.14 +0.8 970,769 - JDDGAC_05510 0.34 -1.6 970,791 - JDDGAC_05510 0.36 -0.4 970,892 + JDDGAC_05510 0.47 -0.6 971,050 + JDDGAC_05510 0.64 -0.8 971,050 + JDDGAC_05510 0.64 -0.4 971,051 - JDDGAC_05510 0.64 -1.1 971,266 + JDDGAC_05510 0.87 -0.1 971,266 + JDDGAC_05510 0.87 -0.2 971,330 - -0.2 971,386 - +0.4 971,401 - +0.3 971,618 - -2.7 971,625 + +0.0 971,958 + JDDGAC_05525 0.29 -0.2 972,184 + JDDGAC_05530 0.11 +0.1 972,248 + JDDGAC_05530 0.34 -0.9
Or see this region's nucleotide sequence