Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mepH and grxD are separated by 334 nucleotides grxD and lhr are separated by 50 nucleotides lhr and rnt are separated by 92 nucleotides rnt and JDDGAC_02020 are separated by 102 nucleotides
JDDGAC_02000: mepH - peptidoglycan DD-endopeptidase MepH, at 355,576 to 356,391
mepH
JDDGAC_02005: grxD - monothiol glutaredoxin 4, at 356,726 to 357,073
grxD
JDDGAC_02010: lhr - ATP-dependent helicase, at 357,124 to 361,740
lhr
JDDGAC_02015: rnt - ribonuclease T, at 361,833 to 362,480
rnt
JDDGAC_02020: JDDGAC_02020 - Lactoylglutathione lyase, at 362,583 to 362,990
_02020
Position (kb) 357
358
359
360
361
362 Strain fitness (log2 ratio) -2
-1
0
1
2 at 356.374 kb on - strand at 356.456 kb on + strand at 356.463 kb on + strand at 356.463 kb on + strand at 356.463 kb on + strand at 356.463 kb on + strand at 356.464 kb on - strand at 356.489 kb on + strand at 356.783 kb on + strand, within grxD at 356.783 kb on + strand, within grxD at 356.996 kb on + strand, within grxD at 356.997 kb on - strand, within grxD at 357.044 kb on + strand at 357.087 kb on - strand at 357.292 kb on + strand at 357.293 kb on - strand at 357.345 kb on - strand at 357.484 kb on - strand at 357.485 kb on + strand at 357.574 kb on + strand at 357.795 kb on - strand, within lhr at 357.795 kb on - strand, within lhr at 357.795 kb on - strand, within lhr at 357.795 kb on - strand, within lhr at 357.795 kb on - strand, within lhr at 358.131 kb on - strand, within lhr at 358.431 kb on - strand, within lhr at 358.655 kb on - strand, within lhr at 358.695 kb on - strand, within lhr at 358.718 kb on - strand, within lhr at 358.811 kb on - strand, within lhr at 358.832 kb on + strand, within lhr at 359.002 kb on + strand, within lhr at 359.103 kb on - strand, within lhr at 359.107 kb on - strand, within lhr at 359.132 kb on - strand, within lhr at 359.132 kb on - strand, within lhr at 359.157 kb on + strand, within lhr at 359.158 kb on - strand, within lhr at 359.161 kb on - strand, within lhr at 359.234 kb on + strand, within lhr at 360.003 kb on - strand, within lhr at 360.003 kb on - strand, within lhr at 360.005 kb on - strand, within lhr at 360.005 kb on - strand, within lhr at 360.076 kb on - strand, within lhr at 360.077 kb on + strand, within lhr at 360.077 kb on + strand, within lhr at 360.078 kb on - strand, within lhr at 360.078 kb on - strand, within lhr at 360.078 kb on - strand, within lhr at 360.078 kb on - strand, within lhr at 360.311 kb on - strand, within lhr at 360.406 kb on - strand, within lhr at 360.413 kb on - strand, within lhr at 360.482 kb on - strand, within lhr at 360.709 kb on + strand, within lhr at 360.794 kb on + strand, within lhr at 360.806 kb on - strand, within lhr at 360.844 kb on - strand, within lhr at 360.900 kb on + strand, within lhr at 361.003 kb on + strand, within lhr at 361.347 kb on + strand at 361.459 kb on + strand at 361.471 kb on - strand at 361.792 kb on + strand at 361.792 kb on + strand at 361.792 kb on + strand at 361.792 kb on + strand at 361.835 kb on - strand at 361.835 kb on - strand at 361.835 kb on - strand at 362.526 kb on + strand at 362.585 kb on - strand at 362.670 kb on - strand, within JDDGAC_02020
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 356,374 - -0.2 356,456 + +0.1 356,463 + +0.4 356,463 + -0.9 356,463 + -0.3 356,463 + -0.0 356,464 - +0.3 356,489 + -2.5 356,783 + grxD JDDGAC_02005 0.16 +0.9 356,783 + grxD JDDGAC_02005 0.16 -0.1 356,996 + grxD JDDGAC_02005 0.78 -1.9 356,997 - grxD JDDGAC_02005 0.78 +0.6 357,044 + +0.1 357,087 - -0.2 357,292 + +0.8 357,293 - +0.3 357,345 - -1.9 357,484 - +0.5 357,485 + +1.5 357,574 + -1.3 357,795 - lhr JDDGAC_02010 0.15 +0.7 357,795 - lhr JDDGAC_02010 0.15 -0.5 357,795 - lhr JDDGAC_02010 0.15 -0.6 357,795 - lhr JDDGAC_02010 0.15 +1.0 357,795 - lhr JDDGAC_02010 0.15 +0.7 358,131 - lhr JDDGAC_02010 0.22 -1.5 358,431 - lhr JDDGAC_02010 0.28 +0.1 358,655 - lhr JDDGAC_02010 0.33 +0.7 358,695 - lhr JDDGAC_02010 0.34 +0.7 358,718 - lhr JDDGAC_02010 0.35 +0.5 358,811 - lhr JDDGAC_02010 0.37 +0.4 358,832 + lhr JDDGAC_02010 0.37 +0.8 359,002 + lhr JDDGAC_02010 0.41 +0.5 359,103 - lhr JDDGAC_02010 0.43 +0.4 359,107 - lhr JDDGAC_02010 0.43 -0.4 359,132 - lhr JDDGAC_02010 0.43 -0.4 359,132 - lhr JDDGAC_02010 0.43 -0.5 359,157 + lhr JDDGAC_02010 0.44 +0.2 359,158 - lhr JDDGAC_02010 0.44 +1.6 359,161 - lhr JDDGAC_02010 0.44 -0.3 359,234 + lhr JDDGAC_02010 0.46 -2.3 360,003 - lhr JDDGAC_02010 0.62 -0.4 360,003 - lhr JDDGAC_02010 0.62 +0.8 360,005 - lhr JDDGAC_02010 0.62 +1.5 360,005 - lhr JDDGAC_02010 0.62 +1.8 360,076 - lhr JDDGAC_02010 0.64 +1.0 360,077 + lhr JDDGAC_02010 0.64 +1.1 360,077 + lhr JDDGAC_02010 0.64 -0.4 360,078 - lhr JDDGAC_02010 0.64 -0.5 360,078 - lhr JDDGAC_02010 0.64 +0.2 360,078 - lhr JDDGAC_02010 0.64 -0.5 360,078 - lhr JDDGAC_02010 0.64 +0.6 360,311 - lhr JDDGAC_02010 0.69 +0.4 360,406 - lhr JDDGAC_02010 0.71 -2.7 360,413 - lhr JDDGAC_02010 0.71 +0.8 360,482 - lhr JDDGAC_02010 0.73 +1.8 360,709 + lhr JDDGAC_02010 0.78 -0.6 360,794 + lhr JDDGAC_02010 0.79 -2.2 360,806 - lhr JDDGAC_02010 0.80 +0.1 360,844 - lhr JDDGAC_02010 0.81 -0.1 360,900 + lhr JDDGAC_02010 0.82 +0.2 361,003 + lhr JDDGAC_02010 0.84 -0.0 361,347 + +0.9 361,459 + +1.5 361,471 - -0.1 361,792 + +0.1 361,792 + +0.6 361,792 + -1.1 361,792 + -0.4 361,835 - -0.0 361,835 - -0.9 361,835 - +1.0 362,526 + -0.1 362,585 - +0.5 362,670 - JDDGAC_02020 0.21 -0.4
Or see this region's nucleotide sequence