Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01705

Experiment: WM_Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntselO and ydiE are separated by 3 nucleotidesydiE and aroH are separated by 131 nucleotides JDDGAC_01700: selO - protein adenylyltransferase SelO, at 298,282 to 299,718 selO JDDGAC_01705: ydiE - Uncharacterized protein YdiE, at 299,722 to 299,913 ydiE JDDGAC_01710: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 300,045 to 301,091 aroH Position (kb) 299 300Strain fitness (log2 ratio) -2 -1 0 1 2at 298.967 kb on + strand, within selOat 299.122 kb on + strand, within selOat 299.417 kb on + strand, within selOat 299.599 kb on - strandat 299.769 kb on - strand, within ydiEat 299.904 kb on + strandat 300.072 kb on + strandat 300.197 kb on + strand, within aroHat 300.402 kb on - strand, within aroHat 300.402 kb on - strand, within aroHat 300.433 kb on + strand, within aroHat 300.473 kb on + strand, within aroHat 300.473 kb on + strand, within aroHat 300.474 kb on - strand, within aroHat 300.474 kb on - strand, within aroHat 300.519 kb on - strand, within aroHat 300.697 kb on - strand, within aroHat 300.757 kb on - strand, within aroHat 300.826 kb on - strand, within aroH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
remove
298,967 + selO JDDGAC_01700 0.48 +0.6
299,122 + selO JDDGAC_01700 0.58 +1.8
299,417 + selO JDDGAC_01700 0.79 -0.2
299,599 - +2.0
299,769 - ydiE JDDGAC_01705 0.24 +0.1
299,904 + +0.4
300,072 + +1.6
300,197 + aroH JDDGAC_01710 0.15 -0.5
300,402 - aroH JDDGAC_01710 0.34 -0.1
300,402 - aroH JDDGAC_01710 0.34 -0.7
300,433 + aroH JDDGAC_01710 0.37 +0.5
300,473 + aroH JDDGAC_01710 0.41 -1.4
300,473 + aroH JDDGAC_01710 0.41 +0.7
300,474 - aroH JDDGAC_01710 0.41 -0.1
300,474 - aroH JDDGAC_01710 0.41 +0.1
300,519 - aroH JDDGAC_01710 0.45 +0.4
300,697 - aroH JDDGAC_01710 0.62 -2.2
300,757 - aroH JDDGAC_01710 0.68 -0.4
300,826 - aroH JDDGAC_01710 0.75 -0.6

Or see this region's nucleotide sequence