Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_00455 and JDDGAC_00460 are separated by 54 nucleotides JDDGAC_00460 and JDDGAC_00465 are separated by 150 nucleotides JDDGAC_00465 and JDDGAC_00470 are separated by 11 nucleotides JDDGAC_00470 and JDDGAC_00475 are separated by 12 nucleotides
JDDGAC_00455: JDDGAC_00455 - phage major tail tube protein, at 78,878 to 79,390
_00455
JDDGAC_00460: JDDGAC_00460 - phage tail protein, at 79,445 to 79,810
_00460
JDDGAC_00465: JDDGAC_00465 - Putative tail fiber component of prophage CP-933T, at 79,961 to 82,051
_00465
JDDGAC_00470: JDDGAC_00470 - Putative tail fiber protein of prophage CP-933T, at 82,063 to 82,764
_00470
JDDGAC_00475: JDDGAC_00475 - oxidoreductase, at 82,777 to 83,265
_00475
Position (kb) 79
80
81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 79.022 kb on - strand, within JDDGAC_00455 at 79.100 kb on + strand, within JDDGAC_00455 at 79.145 kb on + strand, within JDDGAC_00455 at 79.250 kb on + strand, within JDDGAC_00455 at 79.271 kb on + strand, within JDDGAC_00455 at 79.271 kb on + strand, within JDDGAC_00455 at 79.329 kb on - strand, within JDDGAC_00455 at 79.391 kb on + strand at 79.396 kb on - strand at 79.487 kb on - strand, within JDDGAC_00460 at 79.529 kb on - strand, within JDDGAC_00460 at 79.658 kb on - strand, within JDDGAC_00460 at 79.658 kb on - strand, within JDDGAC_00460 at 79.738 kb on - strand, within JDDGAC_00460 at 79.835 kb on + strand at 79.835 kb on + strand at 79.854 kb on + strand at 80.194 kb on - strand, within JDDGAC_00465 at 80.247 kb on + strand, within JDDGAC_00465 at 80.393 kb on + strand, within JDDGAC_00465 at 80.394 kb on - strand, within JDDGAC_00465 at 80.767 kb on + strand, within JDDGAC_00465 at 80.768 kb on - strand, within JDDGAC_00465 at 80.814 kb on + strand, within JDDGAC_00465 at 80.814 kb on + strand, within JDDGAC_00465 at 80.814 kb on + strand, within JDDGAC_00465 at 80.815 kb on - strand, within JDDGAC_00465 at 80.815 kb on - strand, within JDDGAC_00465 at 80.815 kb on - strand, within JDDGAC_00465 at 80.939 kb on + strand, within JDDGAC_00465 at 81.176 kb on + strand, within JDDGAC_00465 at 81.176 kb on + strand, within JDDGAC_00465 at 81.532 kb on - strand, within JDDGAC_00465 at 81.532 kb on - strand, within JDDGAC_00465 at 81.791 kb on - strand, within JDDGAC_00465 at 81.934 kb on - strand at 81.988 kb on - strand at 81.988 kb on - strand at 82.010 kb on + strand at 82.236 kb on + strand, within JDDGAC_00470 at 82.236 kb on + strand, within JDDGAC_00470 at 82.304 kb on + strand, within JDDGAC_00470 at 82.305 kb on - strand, within JDDGAC_00470 at 82.474 kb on - strand, within JDDGAC_00470 at 82.559 kb on + strand, within JDDGAC_00470 at 82.789 kb on + strand at 82.789 kb on + strand at 82.790 kb on - strand at 82.790 kb on - strand at 82.836 kb on - strand, within JDDGAC_00475 at 82.901 kb on - strand, within JDDGAC_00475 at 82.901 kb on - strand, within JDDGAC_00475 at 82.902 kb on + strand, within JDDGAC_00475 at 82.946 kb on - strand, within JDDGAC_00475 at 82.946 kb on - strand, within JDDGAC_00475 at 82.999 kb on + strand, within JDDGAC_00475 at 83.001 kb on + strand, within JDDGAC_00475 at 83.002 kb on - strand, within JDDGAC_00475 at 83.002 kb on - strand, within JDDGAC_00475 at 83.002 kb on - strand, within JDDGAC_00475
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 79,022 - JDDGAC_00455 0.28 -2.0 79,100 + JDDGAC_00455 0.43 -0.1 79,145 + JDDGAC_00455 0.52 +1.9 79,250 + JDDGAC_00455 0.73 -1.0 79,271 + JDDGAC_00455 0.77 +0.1 79,271 + JDDGAC_00455 0.77 -0.1 79,329 - JDDGAC_00455 0.88 +1.1 79,391 + -0.5 79,396 - +0.9 79,487 - JDDGAC_00460 0.11 -2.1 79,529 - JDDGAC_00460 0.23 -1.9 79,658 - JDDGAC_00460 0.58 -1.4 79,658 - JDDGAC_00460 0.58 -0.2 79,738 - JDDGAC_00460 0.80 +1.2 79,835 + +0.1 79,835 + -0.0 79,854 + -0.9 80,194 - JDDGAC_00465 0.11 +0.4 80,247 + JDDGAC_00465 0.14 +0.6 80,393 + JDDGAC_00465 0.21 -2.6 80,394 - JDDGAC_00465 0.21 -1.9 80,767 + JDDGAC_00465 0.39 -1.8 80,768 - JDDGAC_00465 0.39 +1.6 80,814 + JDDGAC_00465 0.41 -0.5 80,814 + JDDGAC_00465 0.41 +0.1 80,814 + JDDGAC_00465 0.41 +1.3 80,815 - JDDGAC_00465 0.41 +1.1 80,815 - JDDGAC_00465 0.41 -0.3 80,815 - JDDGAC_00465 0.41 -0.5 80,939 + JDDGAC_00465 0.47 +0.4 81,176 + JDDGAC_00465 0.58 -0.3 81,176 + JDDGAC_00465 0.58 -0.8 81,532 - JDDGAC_00465 0.75 -0.6 81,532 - JDDGAC_00465 0.75 -0.6 81,791 - JDDGAC_00465 0.88 -1.4 81,934 - +0.7 81,988 - -1.4 81,988 - +1.5 82,010 + -2.2 82,236 + JDDGAC_00470 0.25 +0.3 82,236 + JDDGAC_00470 0.25 -0.9 82,304 + JDDGAC_00470 0.34 +2.0 82,305 - JDDGAC_00470 0.34 -2.7 82,474 - JDDGAC_00470 0.59 +0.1 82,559 + JDDGAC_00470 0.71 +0.1 82,789 + +0.6 82,789 + +1.1 82,790 - -3.1 82,790 - -2.2 82,836 - JDDGAC_00475 0.12 +0.5 82,901 - JDDGAC_00475 0.25 +1.0 82,901 - JDDGAC_00475 0.25 +0.3 82,902 + JDDGAC_00475 0.26 +0.6 82,946 - JDDGAC_00475 0.35 +0.8 82,946 - JDDGAC_00475 0.35 -0.8 82,999 + JDDGAC_00475 0.45 +0.9 83,001 + JDDGAC_00475 0.46 -1.1 83,002 - JDDGAC_00475 0.46 -0.3 83,002 - JDDGAC_00475 0.46 +0.2 83,002 - JDDGAC_00475 0.46 -1.9
Or see this region's nucleotide sequence