Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16155

Experiment: Hypoxanthine 0.7347 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS16415 and A4249_RS16150 are separated by 78 nucleotidesA4249_RS16150 and A4249_RS16155 are separated by 216 nucleotidesA4249_RS16155 and A4249_RS16160 are separated by 52 nucleotides A4249_RS16415: A4249_RS16415 - UDP-glucose 4-epimerase GalE, at 3,259,289 to 3,260,233 _RS16415 A4249_RS16150: A4249_RS16150 - hypothetical protein, at 3,260,312 to 3,260,578 _RS16150 A4249_RS16155: A4249_RS16155 - tRNA-Glu, at 3,260,795 to 3,260,869 _RS16155 A4249_RS16160: A4249_RS16160 - cystathionine gamma-synthase, at 3,260,922 to 3,262,103 _RS16160 Position (kb) 3260 3261Strain fitness (log2 ratio) -2 -1 0 1 2at 3259.843 kb on - strand, within A4249_RS16415at 3259.843 kb on - strand, within A4249_RS16415at 3259.877 kb on + strand, within A4249_RS16415at 3259.877 kb on + strand, within A4249_RS16415at 3259.935 kb on + strand, within A4249_RS16415at 3259.935 kb on + strand, within A4249_RS16415at 3259.938 kb on + strand, within A4249_RS16415at 3259.938 kb on + strand, within A4249_RS16415at 3259.938 kb on + strand, within A4249_RS16415at 3259.938 kb on + strand, within A4249_RS16415at 3259.938 kb on + strand, within A4249_RS16415at 3259.939 kb on - strand, within A4249_RS16415at 3259.939 kb on - strand, within A4249_RS16415at 3259.939 kb on - strand, within A4249_RS16415at 3259.939 kb on - strand, within A4249_RS16415at 3259.939 kb on - strand, within A4249_RS16415at 3260.078 kb on + strand, within A4249_RS16415at 3260.078 kb on + strand, within A4249_RS16415at 3260.079 kb on - strand, within A4249_RS16415at 3260.079 kb on - strand, within A4249_RS16415at 3260.079 kb on - strand, within A4249_RS16415at 3260.079 kb on - strand, within A4249_RS16415at 3260.112 kb on + strand, within A4249_RS16415at 3260.112 kb on + strand, within A4249_RS16415at 3260.112 kb on + strand, within A4249_RS16415at 3260.112 kb on + strand, within A4249_RS16415at 3260.112 kb on + strand, within A4249_RS16415at 3260.112 kb on + strand, within A4249_RS16415at 3260.112 kb on + strand, within A4249_RS16415at 3260.112 kb on + strand, within A4249_RS16415at 3260.113 kb on - strand, within A4249_RS16415at 3260.113 kb on - strand, within A4249_RS16415at 3260.113 kb on - strand, within A4249_RS16415at 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.169 kb on + strandat 3260.170 kb on - strandat 3260.170 kb on - strandat 3260.289 kb on + strandat 3260.391 kb on + strand, within A4249_RS16150at 3260.391 kb on + strand, within A4249_RS16150at 3260.392 kb on - strand, within A4249_RS16150at 3260.621 kb on + strandat 3260.622 kb on - strandat 3260.651 kb on + strandat 3260.695 kb on + strandat 3260.849 kb on + strand, within A4249_RS16155at 3260.856 kb on + strand, within A4249_RS16155at 3260.924 kb on - strandat 3261.235 kb on - strand, within A4249_RS16160at 3261.354 kb on + strand, within A4249_RS16160at 3261.355 kb on - strand, within A4249_RS16160at 3261.355 kb on - strand, within A4249_RS16160at 3261.355 kb on - strand, within A4249_RS16160at 3261.382 kb on + strand, within A4249_RS16160at 3261.383 kb on - strand, within A4249_RS16160at 3261.383 kb on - strand, within A4249_RS16160at 3261.383 kb on - strand, within A4249_RS16160at 3261.383 kb on - strand, within A4249_RS16160at 3261.656 kb on + strand, within A4249_RS16160at 3261.656 kb on + strand, within A4249_RS16160at 3261.656 kb on + strand, within A4249_RS16160at 3261.656 kb on + strand, within A4249_RS16160at 3261.656 kb on + strand, within A4249_RS16160at 3261.656 kb on + strand, within A4249_RS16160at 3261.656 kb on + strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.657 kb on - strand, within A4249_RS16160at 3261.683 kb on + strand, within A4249_RS16160at 3261.683 kb on + strand, within A4249_RS16160at 3261.683 kb on + strand, within A4249_RS16160at 3261.683 kb on + strand, within A4249_RS16160at 3261.684 kb on - strand, within A4249_RS16160at 3261.684 kb on - strand, within A4249_RS16160at 3261.796 kb on + strand, within A4249_RS16160at 3261.797 kb on - strand, within A4249_RS16160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
remove
3,259,843 - A4249_RS16415 0.59 -0.2
3,259,843 - A4249_RS16415 0.59 +0.2
3,259,877 + A4249_RS16415 0.62 -0.3
3,259,877 + A4249_RS16415 0.62 -0.3
3,259,935 + A4249_RS16415 0.68 +0.6
3,259,935 + A4249_RS16415 0.68 -1.1
3,259,938 + A4249_RS16415 0.69 -0.8
3,259,938 + A4249_RS16415 0.69 +0.4
3,259,938 + A4249_RS16415 0.69 +1.6
3,259,938 + A4249_RS16415 0.69 +0.6
3,259,938 + A4249_RS16415 0.69 +0.7
3,259,939 - A4249_RS16415 0.69 -0.9
3,259,939 - A4249_RS16415 0.69 +0.6
3,259,939 - A4249_RS16415 0.69 -1.2
3,259,939 - A4249_RS16415 0.69 -0.3
3,259,939 - A4249_RS16415 0.69 -0.6
3,260,078 + A4249_RS16415 0.83 +0.3
3,260,078 + A4249_RS16415 0.83 -0.4
3,260,079 - A4249_RS16415 0.84 -2.7
3,260,079 - A4249_RS16415 0.84 +0.3
3,260,079 - A4249_RS16415 0.84 +0.8
3,260,079 - A4249_RS16415 0.84 +0.5
3,260,112 + A4249_RS16415 0.87 -0.3
3,260,112 + A4249_RS16415 0.87 -1.2
3,260,112 + A4249_RS16415 0.87 -1.0
3,260,112 + A4249_RS16415 0.87 -0.0
3,260,112 + A4249_RS16415 0.87 -0.1
3,260,112 + A4249_RS16415 0.87 +0.2
3,260,112 + A4249_RS16415 0.87 +0.8
3,260,112 + A4249_RS16415 0.87 -0.2
3,260,113 - A4249_RS16415 0.87 +0.3
3,260,113 - A4249_RS16415 0.87 +0.1
3,260,113 - A4249_RS16415 0.87 -0.6
3,260,169 + -0.1
3,260,169 + +0.3
3,260,169 + -0.8
3,260,169 + +1.2
3,260,169 + -0.0
3,260,169 + +0.6
3,260,170 - -0.1
3,260,170 - +0.0
3,260,289 + +0.6
3,260,391 + A4249_RS16150 0.30 +0.2
3,260,391 + A4249_RS16150 0.30 -2.0
3,260,392 - A4249_RS16150 0.30 +2.1
3,260,621 + -0.6
3,260,622 - -1.3
3,260,651 + +0.1
3,260,695 + -0.8
3,260,849 + A4249_RS16155 0.72 -0.1
3,260,856 + A4249_RS16155 0.81 -1.5
3,260,924 - +0.2
3,261,235 - A4249_RS16160 0.26 +1.2
3,261,354 + A4249_RS16160 0.37 -0.4
3,261,355 - A4249_RS16160 0.37 -0.3
3,261,355 - A4249_RS16160 0.37 -0.5
3,261,355 - A4249_RS16160 0.37 +0.4
3,261,382 + A4249_RS16160 0.39 +0.2
3,261,383 - A4249_RS16160 0.39 +0.2
3,261,383 - A4249_RS16160 0.39 +0.8
3,261,383 - A4249_RS16160 0.39 +0.5
3,261,383 - A4249_RS16160 0.39 -0.1
3,261,656 + A4249_RS16160 0.62 +0.3
3,261,656 + A4249_RS16160 0.62 +0.3
3,261,656 + A4249_RS16160 0.62 -0.5
3,261,656 + A4249_RS16160 0.62 -0.1
3,261,656 + A4249_RS16160 0.62 -1.1
3,261,656 + A4249_RS16160 0.62 +0.3
3,261,656 + A4249_RS16160 0.62 +0.2
3,261,657 - A4249_RS16160 0.62 +0.5
3,261,657 - A4249_RS16160 0.62 -0.4
3,261,657 - A4249_RS16160 0.62 +0.1
3,261,657 - A4249_RS16160 0.62 -0.7
3,261,657 - A4249_RS16160 0.62 +0.4
3,261,657 - A4249_RS16160 0.62 -0.6
3,261,657 - A4249_RS16160 0.62 +0.2
3,261,657 - A4249_RS16160 0.62 +0.9
3,261,657 - A4249_RS16160 0.62 +1.4
3,261,657 - A4249_RS16160 0.62 +0.5
3,261,657 - A4249_RS16160 0.62 +1.8
3,261,657 - A4249_RS16160 0.62 -0.3
3,261,683 + A4249_RS16160 0.64 +0.1
3,261,683 + A4249_RS16160 0.64 +0.3
3,261,683 + A4249_RS16160 0.64 -0.7
3,261,683 + A4249_RS16160 0.64 +0.0
3,261,684 - A4249_RS16160 0.64 +0.2
3,261,684 - A4249_RS16160 0.64 +1.6
3,261,796 + A4249_RS16160 0.74 +0.4
3,261,797 - A4249_RS16160 0.74 -0.1

Or see this region's nucleotide sequence