Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16090

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS16080 and A4249_RS16085 are separated by 78 nucleotidesA4249_RS16085 and A4249_RS16090 are separated by 32 nucleotidesA4249_RS16090 and A4249_RS16095 are separated by 64 nucleotidesA4249_RS16095 and A4249_RS16100 are separated by 272 nucleotides A4249_RS16080: A4249_RS16080 - ribosome-associated translation inhibitor RaiA, at 3,238,946 to 3,239,590 _RS16080 A4249_RS16085: A4249_RS16085 - PTS IIA-like nitrogen regulatory protein PtsN, at 3,239,669 to 3,240,136 _RS16085 A4249_RS16090: A4249_RS16090 - DUF1150 domain-containing protein, at 3,240,169 to 3,240,419 _RS16090 A4249_RS16095: A4249_RS16095 - Hsp20 family protein, at 3,240,484 to 3,240,921 _RS16095 A4249_RS16100: A4249_RS16100 - ammonium transporter, at 3,241,194 to 3,242,507 _RS16100 Position (kb) 3240 3241Strain fitness (log2 ratio) -2 -1 0 1 2at 3239.425 kb on + strand, within A4249_RS16080at 3239.425 kb on + strand, within A4249_RS16080at 3239.425 kb on + strand, within A4249_RS16080at 3239.425 kb on + strand, within A4249_RS16080at 3239.516 kb on + strand, within A4249_RS16080at 3239.516 kb on + strand, within A4249_RS16080at 3239.517 kb on - strand, within A4249_RS16080at 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.667 kb on + strandat 3239.667 kb on + strandat 3239.930 kb on + strand, within A4249_RS16085at 3239.930 kb on + strand, within A4249_RS16085at 3239.930 kb on + strand, within A4249_RS16085at 3239.931 kb on - strand, within A4249_RS16085at 3239.931 kb on - strand, within A4249_RS16085at 3240.274 kb on + strand, within A4249_RS16090at 3240.274 kb on + strand, within A4249_RS16090at 3240.274 kb on + strand, within A4249_RS16090at 3240.274 kb on + strand, within A4249_RS16090at 3240.275 kb on - strand, within A4249_RS16090at 3240.275 kb on - strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.421 kb on - strandat 3240.421 kb on - strandat 3240.421 kb on - strandat 3240.437 kb on + strandat 3240.437 kb on + strandat 3240.437 kb on + strandat 3240.437 kb on + strandat 3240.438 kb on - strandat 3240.438 kb on - strandat 3240.438 kb on - strandat 3240.438 kb on - strandat 3240.438 kb on - strandat 3240.510 kb on + strandat 3240.510 kb on + strandat 3240.511 kb on - strandat 3240.511 kb on - strandat 3240.810 kb on - strand, within A4249_RS16095at 3240.810 kb on - strand, within A4249_RS16095at 3240.810 kb on - strand, within A4249_RS16095at 3240.810 kb on - strand, within A4249_RS16095at 3240.810 kb on - strand, within A4249_RS16095at 3240.819 kb on - strand, within A4249_RS16095at 3240.819 kb on - strand, within A4249_RS16095at 3241.091 kb on + strandat 3241.092 kb on - strandat 3241.092 kb on - strandat 3241.092 kb on - strandat 3241.092 kb on - strandat 3241.126 kb on - strandat 3241.196 kb on - strandat 3241.220 kb on + strandat 3241.220 kb on + strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.222 kb on + strandat 3241.222 kb on + strandat 3241.222 kb on + strandat 3241.223 kb on - strandat 3241.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,239,425 + A4249_RS16080 0.74 -0.4
3,239,425 + A4249_RS16080 0.74 -0.1
3,239,425 + A4249_RS16080 0.74 +1.2
3,239,425 + A4249_RS16080 0.74 -0.1
3,239,516 + A4249_RS16080 0.88 +0.5
3,239,516 + A4249_RS16080 0.88 +0.1
3,239,517 - A4249_RS16080 0.89 -0.7
3,239,588 + +0.2
3,239,588 + +0.3
3,239,588 + +0.4
3,239,588 + -0.2
3,239,588 + -0.4
3,239,588 + +0.4
3,239,588 + -0.7
3,239,588 + -0.5
3,239,589 - +0.6
3,239,589 - +0.1
3,239,589 - +0.9
3,239,589 - +0.8
3,239,589 - +1.0
3,239,589 - -1.1
3,239,667 + +1.1
3,239,667 + -0.8
3,239,930 + A4249_RS16085 0.56 -0.3
3,239,930 + A4249_RS16085 0.56 -0.4
3,239,930 + A4249_RS16085 0.56 -2.1
3,239,931 - A4249_RS16085 0.56 -1.3
3,239,931 - A4249_RS16085 0.56 +0.6
3,240,274 + A4249_RS16090 0.42 +0.2
3,240,274 + A4249_RS16090 0.42 -0.6
3,240,274 + A4249_RS16090 0.42 -2.4
3,240,274 + A4249_RS16090 0.42 +0.1
3,240,275 - A4249_RS16090 0.42 +0.5
3,240,275 - A4249_RS16090 0.42 +0.3
3,240,358 + A4249_RS16090 0.75 -0.4
3,240,358 + A4249_RS16090 0.75 +0.0
3,240,358 + A4249_RS16090 0.75 -0.4
3,240,358 + A4249_RS16090 0.75 -0.2
3,240,358 + A4249_RS16090 0.75 -0.2
3,240,359 - A4249_RS16090 0.76 -0.5
3,240,359 - A4249_RS16090 0.76 +1.4
3,240,359 - A4249_RS16090 0.76 +0.0
3,240,359 - A4249_RS16090 0.76 -0.1
3,240,359 - A4249_RS16090 0.76 -0.8
3,240,359 - A4249_RS16090 0.76 +0.6
3,240,359 - A4249_RS16090 0.76 -0.2
3,240,359 - A4249_RS16090 0.76 -0.6
3,240,359 - A4249_RS16090 0.76 -0.2
3,240,359 - A4249_RS16090 0.76 -0.0
3,240,421 - +0.3
3,240,421 - +0.3
3,240,421 - +0.3
3,240,437 + +0.3
3,240,437 + -0.5
3,240,437 + -0.2
3,240,437 + +0.8
3,240,438 - +1.1
3,240,438 - -1.1
3,240,438 - -0.1
3,240,438 - -0.3
3,240,438 - -0.4
3,240,510 + +0.3
3,240,510 + -0.1
3,240,511 - +0.2
3,240,511 - +0.6
3,240,810 - A4249_RS16095 0.74 +1.4
3,240,810 - A4249_RS16095 0.74 -0.5
3,240,810 - A4249_RS16095 0.74 +0.5
3,240,810 - A4249_RS16095 0.74 +1.2
3,240,810 - A4249_RS16095 0.74 +0.1
3,240,819 - A4249_RS16095 0.76 -0.4
3,240,819 - A4249_RS16095 0.76 +0.2
3,241,091 + -0.8
3,241,092 - -0.9
3,241,092 - +0.1
3,241,092 - +0.3
3,241,092 - -0.2
3,241,126 - -1.4
3,241,196 - +0.9
3,241,220 + -0.3
3,241,220 + +0.1
3,241,221 - +0.2
3,241,221 - -0.8
3,241,221 - -0.5
3,241,221 - +2.4
3,241,221 - +0.7
3,241,221 - +0.2
3,241,221 - -0.4
3,241,221 - +1.3
3,241,222 + -0.7
3,241,222 + -0.9
3,241,222 + +0.1
3,241,223 - -0.1
3,241,223 - -0.5

Or see this region's nucleotide sequence