Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15440

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15425 and A4249_RS15430 are separated by 171 nucleotidesA4249_RS15430 and A4249_RS15435 are separated by 41 nucleotidesA4249_RS15435 and A4249_RS15440 overlap by 4 nucleotidesA4249_RS15440 and A4249_RS15445 overlap by 2 nucleotides A4249_RS15425: A4249_RS15425 - helix-turn-helix transcriptional regulator, at 3,125,852 to 3,126,205 _RS15425 A4249_RS15430: A4249_RS15430 - tRNA-Thr, at 3,126,377 to 3,126,452 _RS15430 A4249_RS15435: A4249_RS15435 - uroporphyrinogen-III synthase, at 3,126,494 to 3,127,201 _RS15435 A4249_RS15440: A4249_RS15440 - hydroxymethylbilane synthase, at 3,127,198 to 3,128,163 _RS15440 A4249_RS15445: A4249_RS15445 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 3,128,162 to 3,129,349 _RS15445 Position (kb) 3127 3128 3129Strain fitness (log2 ratio) -2 -1 0 1 2at 3126.221 kb on + strandat 3126.221 kb on + strandat 3126.221 kb on + strandat 3126.221 kb on + strandat 3126.222 kb on - strandat 3126.222 kb on - strandat 3126.222 kb on - strandat 3126.222 kb on - strandat 3126.222 kb on - strandat 3126.222 kb on - strandat 3126.225 kb on + strandat 3126.225 kb on + strandat 3126.225 kb on + strandat 3126.225 kb on + strandat 3126.225 kb on + strandat 3126.225 kb on + strandat 3126.225 kb on + strandat 3126.225 kb on + strandat 3126.225 kb on + strandat 3126.226 kb on - strandat 3126.226 kb on - strandat 3126.226 kb on - strandat 3126.226 kb on - strandat 3126.226 kb on - strandat 3126.276 kb on + strandat 3126.276 kb on + strandat 3126.276 kb on + strandat 3126.276 kb on + strandat 3126.276 kb on + strandat 3126.276 kb on + strandat 3126.276 kb on + strandat 3126.277 kb on - strandat 3126.277 kb on - strandat 3126.277 kb on - strandat 3126.277 kb on - strandat 3126.277 kb on - strandat 3126.277 kb on - strandat 3126.277 kb on - strandat 3126.280 kb on + strandat 3126.280 kb on + strandat 3126.290 kb on + strandat 3126.290 kb on + strandat 3126.290 kb on + strandat 3126.291 kb on - strandat 3126.327 kb on + strandat 3126.340 kb on + strandat 3126.340 kb on + strandat 3126.341 kb on - strandat 3126.341 kb on - strandat 3126.341 kb on - strandat 3126.341 kb on - strandat 3128.224 kb on + strandat 3128.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,126,221 + -0.2
3,126,221 + -0.2
3,126,221 + -1.3
3,126,221 + -0.6
3,126,222 - -0.9
3,126,222 - -0.7
3,126,222 - -1.0
3,126,222 - -1.4
3,126,222 - +2.0
3,126,222 - -0.2
3,126,225 + -1.1
3,126,225 + +0.0
3,126,225 + -0.4
3,126,225 + -1.3
3,126,225 + +1.1
3,126,225 + -1.4
3,126,225 + +0.3
3,126,225 + -0.9
3,126,225 + -0.2
3,126,226 - +0.2
3,126,226 - +0.5
3,126,226 - +0.4
3,126,226 - +0.6
3,126,226 - +0.2
3,126,276 + +0.3
3,126,276 + +0.4
3,126,276 + +0.0
3,126,276 + +0.1
3,126,276 + +0.8
3,126,276 + +0.0
3,126,276 + +0.2
3,126,277 - -1.2
3,126,277 - -0.3
3,126,277 - -0.4
3,126,277 - +0.1
3,126,277 - +0.5
3,126,277 - +0.4
3,126,277 - -0.2
3,126,280 + +0.4
3,126,280 + +0.5
3,126,290 + -2.1
3,126,290 + +0.4
3,126,290 + +1.4
3,126,291 - +0.3
3,126,327 + -0.4
3,126,340 + +1.1
3,126,340 + -0.2
3,126,341 - +0.2
3,126,341 - +0.2
3,126,341 - +0.3
3,126,341 - -0.4
3,128,224 + +1.4
3,128,224 + +1.6

Or see this region's nucleotide sequence