Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15050

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15045 and A4249_RS15050 are separated by 72 nucleotidesA4249_RS15050 and A4249_RS15055 are separated by 58 nucleotidesA4249_RS15055 and A4249_RS15060 overlap by 35 nucleotides A4249_RS15045: A4249_RS15045 - PBP1A family penicillin-binding protein, at 3,043,357 to 3,045,450 _RS15045 A4249_RS15050: A4249_RS15050 - lysozyme inhibitor LprI family protein, at 3,045,523 to 3,045,900 _RS15050 A4249_RS15055: A4249_RS15055 - SprT family zinc-dependent metalloprotease, at 3,045,959 to 3,046,681 _RS15055 A4249_RS15060: A4249_RS15060 - polyhydroxyalkanoate depolymerase, at 3,046,647 to 3,047,927 _RS15060 Position (kb) 3045 3046Strain fitness (log2 ratio) -1 0 1at 3045.299 kb on - strandat 3045.299 kb on - strandat 3045.630 kb on - strand, within A4249_RS15050at 3045.758 kb on + strand, within A4249_RS15050at 3045.758 kb on + strand, within A4249_RS15050at 3045.759 kb on - strand, within A4249_RS15050at 3046.053 kb on + strand, within A4249_RS15055at 3046.053 kb on + strand, within A4249_RS15055at 3046.054 kb on - strand, within A4249_RS15055at 3046.054 kb on - strand, within A4249_RS15055at 3046.107 kb on + strand, within A4249_RS15055at 3046.314 kb on + strand, within A4249_RS15055at 3046.394 kb on + strand, within A4249_RS15055at 3046.394 kb on + strand, within A4249_RS15055at 3046.723 kb on + strandat 3046.724 kb on - strandat 3046.724 kb on - strandat 3046.724 kb on - strandat 3046.762 kb on + strandat 3046.763 kb on - strandat 3046.786 kb on + strand, within A4249_RS15060at 3046.786 kb on + strand, within A4249_RS15060at 3046.787 kb on - strand, within A4249_RS15060at 3046.787 kb on - strand, within A4249_RS15060at 3046.787 kb on - strand, within A4249_RS15060at 3046.787 kb on - strand, within A4249_RS15060

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,045,299 - +0.1
3,045,299 - -0.6
3,045,630 - A4249_RS15050 0.28 -0.0
3,045,758 + A4249_RS15050 0.62 -0.7
3,045,758 + A4249_RS15050 0.62 -0.4
3,045,759 - A4249_RS15050 0.62 -0.7
3,046,053 + A4249_RS15055 0.13 -1.4
3,046,053 + A4249_RS15055 0.13 -0.4
3,046,054 - A4249_RS15055 0.13 -0.1
3,046,054 - A4249_RS15055 0.13 -0.4
3,046,107 + A4249_RS15055 0.20 +1.5
3,046,314 + A4249_RS15055 0.49 -0.0
3,046,394 + A4249_RS15055 0.60 +0.5
3,046,394 + A4249_RS15055 0.60 +1.0
3,046,723 + -0.2
3,046,724 - +0.2
3,046,724 - +0.1
3,046,724 - -0.2
3,046,762 + -0.6
3,046,763 - +0.4
3,046,786 + A4249_RS15060 0.11 -1.5
3,046,786 + A4249_RS15060 0.11 +0.5
3,046,787 - A4249_RS15060 0.11 -0.6
3,046,787 - A4249_RS15060 0.11 +0.5
3,046,787 - A4249_RS15060 0.11 -0.5
3,046,787 - A4249_RS15060 0.11 -0.0

Or see this region's nucleotide sequence