Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15040

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15035 and A4249_RS15040 are separated by 5 nucleotidesA4249_RS15040 and A4249_RS15045 are separated by 106 nucleotides A4249_RS15035: A4249_RS15035 - alpha/beta hydrolase, at 3,041,638 to 3,042,621 _RS15035 A4249_RS15040: A4249_RS15040 - class I SAM-dependent methyltransferase, at 3,042,627 to 3,043,250 _RS15040 A4249_RS15045: A4249_RS15045 - PBP1A family penicillin-binding protein, at 3,043,357 to 3,045,450 _RS15045 Position (kb) 3042 3043 3044Strain fitness (log2 ratio) -3 -2 -1 0 1at 3041.927 kb on + strand, within A4249_RS15035at 3041.927 kb on + strand, within A4249_RS15035at 3041.927 kb on + strand, within A4249_RS15035at 3041.928 kb on - strand, within A4249_RS15035at 3041.928 kb on - strand, within A4249_RS15035at 3041.928 kb on - strand, within A4249_RS15035at 3041.928 kb on - strand, within A4249_RS15035at 3042.034 kb on + strand, within A4249_RS15035at 3042.034 kb on + strand, within A4249_RS15035at 3042.035 kb on - strand, within A4249_RS15035at 3042.035 kb on - strand, within A4249_RS15035at 3042.035 kb on - strand, within A4249_RS15035at 3042.035 kb on - strand, within A4249_RS15035at 3042.035 kb on - strand, within A4249_RS15035at 3042.035 kb on - strand, within A4249_RS15035at 3042.035 kb on - strand, within A4249_RS15035at 3042.035 kb on - strand, within A4249_RS15035at 3042.149 kb on + strand, within A4249_RS15035at 3042.150 kb on - strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.265 kb on + strand, within A4249_RS15035at 3042.266 kb on - strand, within A4249_RS15035at 3042.266 kb on - strand, within A4249_RS15035at 3042.266 kb on - strand, within A4249_RS15035at 3042.266 kb on - strand, within A4249_RS15035at 3042.266 kb on - strand, within A4249_RS15035at 3042.266 kb on - strand, within A4249_RS15035at 3042.266 kb on - strand, within A4249_RS15035at 3042.339 kb on + strand, within A4249_RS15035at 3042.339 kb on + strand, within A4249_RS15035at 3042.339 kb on + strand, within A4249_RS15035at 3042.339 kb on + strand, within A4249_RS15035at 3042.340 kb on - strand, within A4249_RS15035at 3042.340 kb on - strand, within A4249_RS15035at 3042.340 kb on - strand, within A4249_RS15035at 3042.340 kb on - strand, within A4249_RS15035at 3042.340 kb on - strand, within A4249_RS15035at 3042.340 kb on - strand, within A4249_RS15035at 3042.445 kb on + strand, within A4249_RS15035at 3042.445 kb on + strand, within A4249_RS15035at 3042.445 kb on + strand, within A4249_RS15035at 3042.445 kb on + strand, within A4249_RS15035at 3042.445 kb on + strand, within A4249_RS15035at 3042.445 kb on + strand, within A4249_RS15035at 3042.445 kb on + strand, within A4249_RS15035at 3042.445 kb on + strand, within A4249_RS15035at 3042.446 kb on - strand, within A4249_RS15035at 3042.446 kb on - strand, within A4249_RS15035at 3042.446 kb on - strand, within A4249_RS15035at 3042.446 kb on - strand, within A4249_RS15035at 3042.446 kb on - strand, within A4249_RS15035at 3042.446 kb on - strand, within A4249_RS15035at 3042.496 kb on + strand, within A4249_RS15035at 3042.496 kb on + strand, within A4249_RS15035at 3042.496 kb on + strand, within A4249_RS15035at 3042.496 kb on + strand, within A4249_RS15035at 3042.496 kb on + strand, within A4249_RS15035at 3042.497 kb on - strand, within A4249_RS15035at 3042.497 kb on - strand, within A4249_RS15035at 3042.560 kb on + strandat 3042.564 kb on + strandat 3042.564 kb on + strandat 3042.564 kb on + strandat 3042.564 kb on + strandat 3042.564 kb on + strandat 3042.564 kb on + strandat 3042.565 kb on - strandat 3042.565 kb on - strandat 3042.565 kb on - strandat 3042.565 kb on - strandat 3042.565 kb on - strandat 3042.565 kb on - strandat 3042.589 kb on + strandat 3042.589 kb on + strandat 3042.589 kb on + strandat 3042.589 kb on + strandat 3042.590 kb on - strandat 3042.590 kb on - strandat 3042.590 kb on - strandat 3042.619 kb on + strandat 3042.619 kb on + strandat 3042.619 kb on + strandat 3042.619 kb on + strandat 3042.619 kb on + strandat 3042.619 kb on + strandat 3042.619 kb on + strandat 3042.620 kb on - strandat 3042.620 kb on - strandat 3042.620 kb on - strandat 3042.620 kb on - strandat 3042.620 kb on - strandat 3042.620 kb on - strandat 3042.620 kb on - strandat 3042.620 kb on - strandat 3042.620 kb on - strandat 3042.711 kb on + strand, within A4249_RS15040at 3042.712 kb on - strand, within A4249_RS15040at 3042.712 kb on - strand, within A4249_RS15040at 3042.712 kb on - strand, within A4249_RS15040at 3042.742 kb on + strand, within A4249_RS15040at 3042.785 kb on + strand, within A4249_RS15040at 3042.785 kb on + strand, within A4249_RS15040at 3042.785 kb on + strand, within A4249_RS15040at 3042.785 kb on + strand, within A4249_RS15040at 3042.785 kb on + strand, within A4249_RS15040at 3042.785 kb on + strand, within A4249_RS15040at 3042.785 kb on + strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3042.786 kb on - strand, within A4249_RS15040at 3043.125 kb on + strand, within A4249_RS15040at 3043.125 kb on + strand, within A4249_RS15040at 3043.125 kb on + strand, within A4249_RS15040at 3043.126 kb on - strand, within A4249_RS15040at 3043.126 kb on - strand, within A4249_RS15040at 3043.126 kb on - strand, within A4249_RS15040at 3043.126 kb on - strand, within A4249_RS15040at 3043.152 kb on + strand, within A4249_RS15040at 3043.152 kb on + strand, within A4249_RS15040at 3043.153 kb on - strand, within A4249_RS15040at 3043.191 kb on + strandat 3043.191 kb on + strandat 3043.191 kb on + strandat 3043.192 kb on - strandat 3043.192 kb on - strandat 3043.192 kb on - strandat 3043.299 kb on + strandat 3043.300 kb on - strandat 3043.300 kb on - strandat 3043.300 kb on - strandat 3043.300 kb on - strandat 3043.306 kb on + strandat 3043.306 kb on + strandat 3043.307 kb on - strandat 3043.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,041,927 + A4249_RS15035 0.29 -0.5
3,041,927 + A4249_RS15035 0.29 -0.0
3,041,927 + A4249_RS15035 0.29 -0.4
3,041,928 - A4249_RS15035 0.29 -0.4
3,041,928 - A4249_RS15035 0.29 -0.1
3,041,928 - A4249_RS15035 0.29 -0.3
3,041,928 - A4249_RS15035 0.29 +0.3
3,042,034 + A4249_RS15035 0.40 +0.1
3,042,034 + A4249_RS15035 0.40 -0.3
3,042,035 - A4249_RS15035 0.40 -1.2
3,042,035 - A4249_RS15035 0.40 -0.8
3,042,035 - A4249_RS15035 0.40 -0.4
3,042,035 - A4249_RS15035 0.40 -1.0
3,042,035 - A4249_RS15035 0.40 -1.7
3,042,035 - A4249_RS15035 0.40 +0.1
3,042,035 - A4249_RS15035 0.40 +0.7
3,042,035 - A4249_RS15035 0.40 -0.7
3,042,149 + A4249_RS15035 0.52 -0.1
3,042,150 - A4249_RS15035 0.52 +0.2
3,042,265 + A4249_RS15035 0.64 -0.5
3,042,265 + A4249_RS15035 0.64 +0.1
3,042,265 + A4249_RS15035 0.64 -0.2
3,042,265 + A4249_RS15035 0.64 -0.6
3,042,265 + A4249_RS15035 0.64 +0.6
3,042,265 + A4249_RS15035 0.64 +0.4
3,042,265 + A4249_RS15035 0.64 +1.0
3,042,265 + A4249_RS15035 0.64 -0.1
3,042,265 + A4249_RS15035 0.64 +0.0
3,042,265 + A4249_RS15035 0.64 -0.2
3,042,266 - A4249_RS15035 0.64 -0.7
3,042,266 - A4249_RS15035 0.64 -0.5
3,042,266 - A4249_RS15035 0.64 -0.4
3,042,266 - A4249_RS15035 0.64 -0.4
3,042,266 - A4249_RS15035 0.64 -0.2
3,042,266 - A4249_RS15035 0.64 +0.7
3,042,266 - A4249_RS15035 0.64 -0.3
3,042,339 + A4249_RS15035 0.71 +0.7
3,042,339 + A4249_RS15035 0.71 -0.0
3,042,339 + A4249_RS15035 0.71 +0.2
3,042,339 + A4249_RS15035 0.71 -0.5
3,042,340 - A4249_RS15035 0.71 +0.0
3,042,340 - A4249_RS15035 0.71 +0.7
3,042,340 - A4249_RS15035 0.71 -0.2
3,042,340 - A4249_RS15035 0.71 +0.1
3,042,340 - A4249_RS15035 0.71 +0.5
3,042,340 - A4249_RS15035 0.71 +0.0
3,042,445 + A4249_RS15035 0.82 +0.8
3,042,445 + A4249_RS15035 0.82 +0.1
3,042,445 + A4249_RS15035 0.82 -0.3
3,042,445 + A4249_RS15035 0.82 +0.5
3,042,445 + A4249_RS15035 0.82 +0.4
3,042,445 + A4249_RS15035 0.82 -0.9
3,042,445 + A4249_RS15035 0.82 -0.2
3,042,445 + A4249_RS15035 0.82 +0.1
3,042,446 - A4249_RS15035 0.82 -0.9
3,042,446 - A4249_RS15035 0.82 +0.6
3,042,446 - A4249_RS15035 0.82 -0.5
3,042,446 - A4249_RS15035 0.82 -0.8
3,042,446 - A4249_RS15035 0.82 -3.1
3,042,446 - A4249_RS15035 0.82 +0.0
3,042,496 + A4249_RS15035 0.87 +0.1
3,042,496 + A4249_RS15035 0.87 +0.7
3,042,496 + A4249_RS15035 0.87 -0.3
3,042,496 + A4249_RS15035 0.87 +0.3
3,042,496 + A4249_RS15035 0.87 -0.5
3,042,497 - A4249_RS15035 0.87 -0.4
3,042,497 - A4249_RS15035 0.87 -0.1
3,042,560 + -1.0
3,042,564 + +0.2
3,042,564 + +1.1
3,042,564 + +0.2
3,042,564 + -1.4
3,042,564 + +0.1
3,042,564 + +0.2
3,042,565 - -0.2
3,042,565 - -0.2
3,042,565 - -0.6
3,042,565 - -0.1
3,042,565 - +0.2
3,042,565 - +0.7
3,042,589 + -0.2
3,042,589 + -0.3
3,042,589 + -0.5
3,042,589 + +0.5
3,042,590 - -0.3
3,042,590 - -0.3
3,042,590 - -0.3
3,042,619 + -0.2
3,042,619 + -0.8
3,042,619 + -0.9
3,042,619 + -0.2
3,042,619 + +0.2
3,042,619 + -0.1
3,042,619 + -0.6
3,042,620 - +0.2
3,042,620 - +0.1
3,042,620 - -0.2
3,042,620 - -1.1
3,042,620 - -0.8
3,042,620 - +0.6
3,042,620 - -0.2
3,042,620 - -1.4
3,042,620 - -0.4
3,042,711 + A4249_RS15040 0.13 -0.1
3,042,712 - A4249_RS15040 0.14 -0.1
3,042,712 - A4249_RS15040 0.14 -0.6
3,042,712 - A4249_RS15040 0.14 +0.7
3,042,742 + A4249_RS15040 0.18 -0.7
3,042,785 + A4249_RS15040 0.25 +0.5
3,042,785 + A4249_RS15040 0.25 -0.8
3,042,785 + A4249_RS15040 0.25 +0.9
3,042,785 + A4249_RS15040 0.25 -0.2
3,042,785 + A4249_RS15040 0.25 +0.1
3,042,785 + A4249_RS15040 0.25 +0.3
3,042,785 + A4249_RS15040 0.25 -0.4
3,042,786 - A4249_RS15040 0.25 -0.4
3,042,786 - A4249_RS15040 0.25 -0.4
3,042,786 - A4249_RS15040 0.25 +0.2
3,042,786 - A4249_RS15040 0.25 -0.1
3,042,786 - A4249_RS15040 0.25 -0.5
3,042,786 - A4249_RS15040 0.25 -2.5
3,042,786 - A4249_RS15040 0.25 -0.1
3,042,786 - A4249_RS15040 0.25 +0.1
3,042,786 - A4249_RS15040 0.25 +0.8
3,042,786 - A4249_RS15040 0.25 -0.2
3,043,125 + A4249_RS15040 0.80 +1.2
3,043,125 + A4249_RS15040 0.80 +0.1
3,043,125 + A4249_RS15040 0.80 -0.2
3,043,126 - A4249_RS15040 0.80 +0.9
3,043,126 - A4249_RS15040 0.80 -0.6
3,043,126 - A4249_RS15040 0.80 +0.2
3,043,126 - A4249_RS15040 0.80 +0.3
3,043,152 + A4249_RS15040 0.84 -0.4
3,043,152 + A4249_RS15040 0.84 +0.1
3,043,153 - A4249_RS15040 0.84 -0.3
3,043,191 + -0.6
3,043,191 + -0.7
3,043,191 + -0.5
3,043,192 - +0.1
3,043,192 - -0.6
3,043,192 - +0.3
3,043,299 + -0.2
3,043,300 - -1.3
3,043,300 - -0.6
3,043,300 - -0.8
3,043,300 - -0.2
3,043,306 + -0.1
3,043,306 + -0.2
3,043,307 - +1.4
3,043,432 + +0.6

Or see this region's nucleotide sequence