Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14845

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14840 and A4249_RS14845 are separated by 13 nucleotidesA4249_RS14845 and A4249_RS14850 are separated by 315 nucleotides A4249_RS14840: A4249_RS14840 - carboxynorspermidine decarboxylase, at 3,003,464 to 3,004,636 _RS14840 A4249_RS14845: A4249_RS14845 - saccharopine dehydrogenase family protein, at 3,004,650 to 3,005,855 _RS14845 A4249_RS14850: A4249_RS14850 - signal recognition particle protein, at 3,006,171 to 3,007,706 _RS14850 Position (kb) 3004 3005 3006Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3003.654 kb on + strand, within A4249_RS14840at 3003.654 kb on + strand, within A4249_RS14840at 3003.654 kb on + strand, within A4249_RS14840at 3003.654 kb on + strand, within A4249_RS14840at 3003.769 kb on + strand, within A4249_RS14840at 3003.770 kb on - strand, within A4249_RS14840at 3003.885 kb on + strand, within A4249_RS14840at 3003.886 kb on - strand, within A4249_RS14840at 3004.084 kb on + strand, within A4249_RS14840at 3004.170 kb on + strand, within A4249_RS14840at 3004.170 kb on + strand, within A4249_RS14840at 3004.170 kb on + strand, within A4249_RS14840at 3004.171 kb on - strand, within A4249_RS14840at 3004.171 kb on - strand, within A4249_RS14840at 3004.342 kb on + strand, within A4249_RS14840at 3004.342 kb on + strand, within A4249_RS14840at 3004.345 kb on - strand, within A4249_RS14840at 3004.345 kb on - strand, within A4249_RS14840at 3004.345 kb on - strand, within A4249_RS14840at 3004.356 kb on + strand, within A4249_RS14840at 3004.356 kb on + strand, within A4249_RS14840at 3004.356 kb on + strand, within A4249_RS14840at 3004.356 kb on + strand, within A4249_RS14840at 3004.356 kb on + strand, within A4249_RS14840at 3004.357 kb on - strand, within A4249_RS14840at 3004.377 kb on + strand, within A4249_RS14840at 3004.378 kb on - strand, within A4249_RS14840at 3004.378 kb on - strand, within A4249_RS14840at 3004.378 kb on - strand, within A4249_RS14840at 3004.378 kb on - strand, within A4249_RS14840at 3004.406 kb on + strand, within A4249_RS14840at 3004.406 kb on + strand, within A4249_RS14840at 3004.407 kb on - strand, within A4249_RS14840at 3004.434 kb on + strand, within A4249_RS14840at 3004.435 kb on - strand, within A4249_RS14840at 3004.822 kb on + strand, within A4249_RS14845at 3004.823 kb on - strand, within A4249_RS14845at 3004.823 kb on - strand, within A4249_RS14845at 3004.823 kb on - strand, within A4249_RS14845at 3004.823 kb on - strand, within A4249_RS14845at 3004.852 kb on + strand, within A4249_RS14845at 3004.852 kb on + strand, within A4249_RS14845at 3004.852 kb on + strand, within A4249_RS14845at 3004.853 kb on - strand, within A4249_RS14845at 3004.853 kb on - strand, within A4249_RS14845at 3004.853 kb on - strand, within A4249_RS14845at 3004.853 kb on - strand, within A4249_RS14845at 3004.853 kb on - strand, within A4249_RS14845at 3004.885 kb on + strand, within A4249_RS14845at 3004.885 kb on + strand, within A4249_RS14845at 3004.886 kb on - strand, within A4249_RS14845at 3004.886 kb on - strand, within A4249_RS14845at 3005.086 kb on + strand, within A4249_RS14845at 3005.086 kb on + strand, within A4249_RS14845at 3005.086 kb on + strand, within A4249_RS14845at 3005.087 kb on - strand, within A4249_RS14845at 3005.087 kb on - strand, within A4249_RS14845at 3005.087 kb on - strand, within A4249_RS14845at 3005.087 kb on - strand, within A4249_RS14845at 3005.087 kb on - strand, within A4249_RS14845at 3005.087 kb on - strand, within A4249_RS14845at 3005.124 kb on - strand, within A4249_RS14845at 3005.134 kb on + strand, within A4249_RS14845at 3005.167 kb on + strand, within A4249_RS14845at 3005.167 kb on + strand, within A4249_RS14845at 3005.167 kb on + strand, within A4249_RS14845at 3005.167 kb on + strand, within A4249_RS14845at 3005.168 kb on - strand, within A4249_RS14845at 3005.168 kb on - strand, within A4249_RS14845at 3005.168 kb on - strand, within A4249_RS14845at 3005.168 kb on - strand, within A4249_RS14845at 3005.176 kb on + strand, within A4249_RS14845at 3005.176 kb on + strand, within A4249_RS14845at 3005.176 kb on + strand, within A4249_RS14845at 3005.176 kb on + strand, within A4249_RS14845at 3005.176 kb on + strand, within A4249_RS14845at 3005.176 kb on + strand, within A4249_RS14845at 3005.177 kb on - strand, within A4249_RS14845at 3005.177 kb on - strand, within A4249_RS14845at 3005.177 kb on - strand, within A4249_RS14845at 3005.177 kb on - strand, within A4249_RS14845at 3005.177 kb on - strand, within A4249_RS14845at 3005.177 kb on - strand, within A4249_RS14845at 3005.398 kb on + strand, within A4249_RS14845at 3005.398 kb on + strand, within A4249_RS14845at 3005.398 kb on + strand, within A4249_RS14845at 3005.398 kb on + strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.399 kb on - strand, within A4249_RS14845at 3005.482 kb on + strand, within A4249_RS14845at 3005.482 kb on + strand, within A4249_RS14845at 3005.483 kb on - strand, within A4249_RS14845at 3005.483 kb on - strand, within A4249_RS14845at 3005.500 kb on + strand, within A4249_RS14845at 3005.500 kb on + strand, within A4249_RS14845at 3005.501 kb on - strand, within A4249_RS14845at 3005.501 kb on - strand, within A4249_RS14845at 3005.501 kb on - strand, within A4249_RS14845at 3005.501 kb on - strand, within A4249_RS14845at 3005.501 kb on - strand, within A4249_RS14845at 3005.501 kb on - strand, within A4249_RS14845at 3005.530 kb on + strand, within A4249_RS14845at 3005.530 kb on + strand, within A4249_RS14845at 3005.530 kb on + strand, within A4249_RS14845at 3005.530 kb on + strand, within A4249_RS14845at 3005.531 kb on - strand, within A4249_RS14845at 3005.531 kb on - strand, within A4249_RS14845at 3005.549 kb on - strand, within A4249_RS14845at 3005.549 kb on - strand, within A4249_RS14845at 3005.586 kb on + strand, within A4249_RS14845at 3005.586 kb on + strand, within A4249_RS14845at 3005.586 kb on + strand, within A4249_RS14845at 3005.587 kb on - strand, within A4249_RS14845at 3005.587 kb on - strand, within A4249_RS14845at 3005.768 kb on + strandat 3005.768 kb on + strandat 3005.768 kb on + strandat 3005.769 kb on - strandat 3005.769 kb on - strandat 3005.769 kb on - strandat 3005.769 kb on - strandat 3005.769 kb on - strandat 3005.769 kb on - strandat 3005.901 kb on + strandat 3005.902 kb on - strandat 3005.903 kb on + strandat 3005.903 kb on + strandat 3005.904 kb on - strandat 3005.920 kb on - strandat 3005.967 kb on + strandat 3005.967 kb on + strandat 3005.967 kb on + strandat 3005.967 kb on + strandat 3005.968 kb on - strandat 3005.968 kb on - strandat 3005.968 kb on - strandat 3005.968 kb on - strandat 3005.968 kb on - strandat 3005.968 kb on - strandat 3005.969 kb on + strandat 3005.970 kb on - strandat 3006.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,003,654 + A4249_RS14840 0.16 +0.6
3,003,654 + A4249_RS14840 0.16 +0.4
3,003,654 + A4249_RS14840 0.16 +0.4
3,003,654 + A4249_RS14840 0.16 +1.4
3,003,769 + A4249_RS14840 0.26 -0.2
3,003,770 - A4249_RS14840 0.26 -0.4
3,003,885 + A4249_RS14840 0.36 -1.2
3,003,886 - A4249_RS14840 0.36 -0.4
3,004,084 + A4249_RS14840 0.53 -0.4
3,004,170 + A4249_RS14840 0.60 +0.5
3,004,170 + A4249_RS14840 0.60 -1.8
3,004,170 + A4249_RS14840 0.60 +0.4
3,004,171 - A4249_RS14840 0.60 -0.6
3,004,171 - A4249_RS14840 0.60 -0.6
3,004,342 + A4249_RS14840 0.75 +0.9
3,004,342 + A4249_RS14840 0.75 +1.8
3,004,345 - A4249_RS14840 0.75 +0.2
3,004,345 - A4249_RS14840 0.75 -0.6
3,004,345 - A4249_RS14840 0.75 +2.8
3,004,356 + A4249_RS14840 0.76 +0.7
3,004,356 + A4249_RS14840 0.76 -0.4
3,004,356 + A4249_RS14840 0.76 -0.2
3,004,356 + A4249_RS14840 0.76 +0.4
3,004,356 + A4249_RS14840 0.76 -0.8
3,004,357 - A4249_RS14840 0.76 -0.5
3,004,377 + A4249_RS14840 0.78 +0.6
3,004,378 - A4249_RS14840 0.78 +0.4
3,004,378 - A4249_RS14840 0.78 -0.2
3,004,378 - A4249_RS14840 0.78 +0.5
3,004,378 - A4249_RS14840 0.78 +0.1
3,004,406 + A4249_RS14840 0.80 -0.4
3,004,406 + A4249_RS14840 0.80 +0.4
3,004,407 - A4249_RS14840 0.80 -0.2
3,004,434 + A4249_RS14840 0.83 +1.2
3,004,435 - A4249_RS14840 0.83 +0.2
3,004,822 + A4249_RS14845 0.14 -0.4
3,004,823 - A4249_RS14845 0.14 +0.4
3,004,823 - A4249_RS14845 0.14 +1.0
3,004,823 - A4249_RS14845 0.14 +1.4
3,004,823 - A4249_RS14845 0.14 +0.2
3,004,852 + A4249_RS14845 0.17 -1.0
3,004,852 + A4249_RS14845 0.17 +1.2
3,004,852 + A4249_RS14845 0.17 +1.8
3,004,853 - A4249_RS14845 0.17 -0.3
3,004,853 - A4249_RS14845 0.17 -1.6
3,004,853 - A4249_RS14845 0.17 +0.8
3,004,853 - A4249_RS14845 0.17 +0.4
3,004,853 - A4249_RS14845 0.17 +0.1
3,004,885 + A4249_RS14845 0.19 -0.6
3,004,885 + A4249_RS14845 0.19 +0.0
3,004,886 - A4249_RS14845 0.20 -0.6
3,004,886 - A4249_RS14845 0.20 -0.0
3,005,086 + A4249_RS14845 0.36 -1.0
3,005,086 + A4249_RS14845 0.36 +2.4
3,005,086 + A4249_RS14845 0.36 +1.6
3,005,087 - A4249_RS14845 0.36 -0.5
3,005,087 - A4249_RS14845 0.36 +0.1
3,005,087 - A4249_RS14845 0.36 +0.2
3,005,087 - A4249_RS14845 0.36 -1.1
3,005,087 - A4249_RS14845 0.36 -0.2
3,005,087 - A4249_RS14845 0.36 +1.0
3,005,124 - A4249_RS14845 0.39 -0.6
3,005,134 + A4249_RS14845 0.40 -0.4
3,005,167 + A4249_RS14845 0.43 +0.6
3,005,167 + A4249_RS14845 0.43 -0.5
3,005,167 + A4249_RS14845 0.43 -0.9
3,005,167 + A4249_RS14845 0.43 -0.4
3,005,168 - A4249_RS14845 0.43 -0.0
3,005,168 - A4249_RS14845 0.43 +1.4
3,005,168 - A4249_RS14845 0.43 +0.4
3,005,168 - A4249_RS14845 0.43 -0.1
3,005,176 + A4249_RS14845 0.44 +0.8
3,005,176 + A4249_RS14845 0.44 +0.9
3,005,176 + A4249_RS14845 0.44 -0.0
3,005,176 + A4249_RS14845 0.44 -0.2
3,005,176 + A4249_RS14845 0.44 +1.4
3,005,176 + A4249_RS14845 0.44 +0.1
3,005,177 - A4249_RS14845 0.44 -0.8
3,005,177 - A4249_RS14845 0.44 -1.8
3,005,177 - A4249_RS14845 0.44 -0.0
3,005,177 - A4249_RS14845 0.44 -0.4
3,005,177 - A4249_RS14845 0.44 +1.6
3,005,177 - A4249_RS14845 0.44 +0.6
3,005,398 + A4249_RS14845 0.62 -0.8
3,005,398 + A4249_RS14845 0.62 -0.5
3,005,398 + A4249_RS14845 0.62 +0.7
3,005,398 + A4249_RS14845 0.62 -0.2
3,005,399 - A4249_RS14845 0.62 +1.9
3,005,399 - A4249_RS14845 0.62 +0.4
3,005,399 - A4249_RS14845 0.62 +0.2
3,005,399 - A4249_RS14845 0.62 -1.5
3,005,399 - A4249_RS14845 0.62 +0.8
3,005,399 - A4249_RS14845 0.62 +0.6
3,005,399 - A4249_RS14845 0.62 +0.3
3,005,399 - A4249_RS14845 0.62 +0.9
3,005,399 - A4249_RS14845 0.62 -0.3
3,005,399 - A4249_RS14845 0.62 -0.4
3,005,482 + A4249_RS14845 0.69 -1.1
3,005,482 + A4249_RS14845 0.69 -1.9
3,005,483 - A4249_RS14845 0.69 +0.3
3,005,483 - A4249_RS14845 0.69 -1.4
3,005,500 + A4249_RS14845 0.70 -1.8
3,005,500 + A4249_RS14845 0.70 -1.8
3,005,501 - A4249_RS14845 0.71 -0.2
3,005,501 - A4249_RS14845 0.71 +1.1
3,005,501 - A4249_RS14845 0.71 -0.4
3,005,501 - A4249_RS14845 0.71 +0.6
3,005,501 - A4249_RS14845 0.71 -0.6
3,005,501 - A4249_RS14845 0.71 +0.2
3,005,530 + A4249_RS14845 0.73 -0.9
3,005,530 + A4249_RS14845 0.73 +0.2
3,005,530 + A4249_RS14845 0.73 +0.2
3,005,530 + A4249_RS14845 0.73 -2.1
3,005,531 - A4249_RS14845 0.73 +0.4
3,005,531 - A4249_RS14845 0.73 -0.2
3,005,549 - A4249_RS14845 0.75 -0.0
3,005,549 - A4249_RS14845 0.75 -0.5
3,005,586 + A4249_RS14845 0.78 -0.2
3,005,586 + A4249_RS14845 0.78 +0.4
3,005,586 + A4249_RS14845 0.78 -0.0
3,005,587 - A4249_RS14845 0.78 +1.3
3,005,587 - A4249_RS14845 0.78 +0.8
3,005,768 + +0.4
3,005,768 + +1.6
3,005,768 + -1.2
3,005,769 - -0.0
3,005,769 - +0.2
3,005,769 - -1.1
3,005,769 - +0.4
3,005,769 - -0.4
3,005,769 - +0.4
3,005,901 + +0.5
3,005,902 - -0.8
3,005,903 + -0.2
3,005,903 + -0.1
3,005,904 - -0.6
3,005,920 - +0.3
3,005,967 + +1.3
3,005,967 + +0.6
3,005,967 + +0.1
3,005,967 + +0.1
3,005,968 - -0.2
3,005,968 - +0.2
3,005,968 - -0.0
3,005,968 - +0.4
3,005,968 - -0.7
3,005,968 - +0.6
3,005,969 + +0.1
3,005,970 - -1.3
3,006,134 + -2.3

Or see this region's nucleotide sequence