Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12340

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12330 and A4249_RS12335 are separated by 18 nucleotidesA4249_RS12335 and A4249_RS12340 overlap by 1 nucleotidesA4249_RS12340 and A4249_RS12345 are separated by 9 nucleotides A4249_RS12330: A4249_RS12330 - hypothetical protein, at 2,475,095 to 2,475,373 _RS12330 A4249_RS12335: A4249_RS12335 - methionyl-tRNA formyltransferase, at 2,475,392 to 2,476,315 _RS12335 A4249_RS12340: A4249_RS12340 - tRNA pseudouridine(38-40) synthase TruA, at 2,476,315 to 2,477,058 _RS12340 A4249_RS12345: A4249_RS12345 - aspartate-semialdehyde dehydrogenase, at 2,477,068 to 2,478,111 _RS12345 Position (kb) 2476 2477 2478Strain fitness (log2 ratio) -2 -1 0 1 2at 2475.371 kb on + strandat 2476.324 kb on + strandat 2476.324 kb on + strandat 2476.324 kb on + strandat 2476.325 kb on - strandat 2476.343 kb on - strandat 2476.357 kb on + strandat 2476.357 kb on + strandat 2476.357 kb on + strandat 2476.358 kb on - strandat 2476.597 kb on + strand, within A4249_RS12340at 2476.648 kb on + strand, within A4249_RS12340at 2476.649 kb on - strand, within A4249_RS12340at 2476.655 kb on - strand, within A4249_RS12340at 2477.032 kb on + strandat 2477.032 kb on + strandat 2477.033 kb on - strandat 2477.033 kb on - strandat 2477.033 kb on - strandat 2477.050 kb on + strandat 2477.051 kb on - strandat 2477.153 kb on - strandat 2477.153 kb on - strandat 2477.153 kb on - strandat 2477.439 kb on + strand, within A4249_RS12345at 2477.441 kb on + strand, within A4249_RS12345at 2477.442 kb on - strand, within A4249_RS12345at 2477.460 kb on + strand, within A4249_RS12345at 2477.460 kb on + strand, within A4249_RS12345at 2477.460 kb on + strand, within A4249_RS12345at 2477.460 kb on + strand, within A4249_RS12345at 2477.460 kb on + strand, within A4249_RS12345at 2477.461 kb on - strand, within A4249_RS12345at 2477.461 kb on - strand, within A4249_RS12345at 2477.461 kb on - strand, within A4249_RS12345at 2477.462 kb on + strand, within A4249_RS12345at 2477.462 kb on + strand, within A4249_RS12345at 2477.462 kb on + strand, within A4249_RS12345at 2477.462 kb on + strand, within A4249_RS12345at 2477.462 kb on + strand, within A4249_RS12345at 2477.463 kb on - strand, within A4249_RS12345at 2477.463 kb on - strand, within A4249_RS12345at 2477.463 kb on - strand, within A4249_RS12345at 2477.463 kb on - strand, within A4249_RS12345at 2477.630 kb on + strand, within A4249_RS12345at 2477.630 kb on + strand, within A4249_RS12345at 2477.630 kb on + strand, within A4249_RS12345at 2477.630 kb on + strand, within A4249_RS12345at 2477.630 kb on + strand, within A4249_RS12345at 2477.630 kb on + strand, within A4249_RS12345at 2477.631 kb on - strand, within A4249_RS12345at 2477.631 kb on - strand, within A4249_RS12345at 2477.631 kb on - strand, within A4249_RS12345at 2477.631 kb on - strand, within A4249_RS12345at 2477.909 kb on + strand, within A4249_RS12345at 2478.040 kb on + strandat 2478.040 kb on + strandat 2478.040 kb on + strandat 2478.040 kb on + strandat 2478.040 kb on + strandat 2478.040 kb on + strandat 2478.040 kb on + strandat 2478.041 kb on - strandat 2478.041 kb on - strandat 2478.041 kb on - strandat 2478.041 kb on - strandat 2478.041 kb on - strandat 2478.041 kb on - strandat 2478.041 kb on - strandat 2478.041 kb on - strandat 2478.041 kb on - strandat 2478.041 kb on - strandat 2478.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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2,475,371 + +2.4
2,476,324 + -0.3
2,476,324 + -1.2
2,476,324 + -1.7
2,476,325 - -0.5
2,476,343 - +0.3
2,476,357 + -0.6
2,476,357 + +0.4
2,476,357 + +0.8
2,476,358 - -0.4
2,476,597 + A4249_RS12340 0.38 -0.3
2,476,648 + A4249_RS12340 0.45 -0.3
2,476,649 - A4249_RS12340 0.45 -0.4
2,476,655 - A4249_RS12340 0.46 -0.0
2,477,032 + -0.2
2,477,032 + +1.2
2,477,033 - +0.1
2,477,033 - -1.5
2,477,033 - -0.7
2,477,050 + +0.3
2,477,051 - +0.1
2,477,153 - -0.3
2,477,153 - -0.8
2,477,153 - +0.9
2,477,439 + A4249_RS12345 0.36 +0.4
2,477,441 + A4249_RS12345 0.36 -0.2
2,477,442 - A4249_RS12345 0.36 +0.4
2,477,460 + A4249_RS12345 0.38 +0.3
2,477,460 + A4249_RS12345 0.38 +0.8
2,477,460 + A4249_RS12345 0.38 -0.1
2,477,460 + A4249_RS12345 0.38 -0.1
2,477,460 + A4249_RS12345 0.38 +0.0
2,477,461 - A4249_RS12345 0.38 -1.8
2,477,461 - A4249_RS12345 0.38 +1.3
2,477,461 - A4249_RS12345 0.38 -0.2
2,477,462 + A4249_RS12345 0.38 +0.7
2,477,462 + A4249_RS12345 0.38 +0.2
2,477,462 + A4249_RS12345 0.38 -1.0
2,477,462 + A4249_RS12345 0.38 +0.5
2,477,462 + A4249_RS12345 0.38 +0.4
2,477,463 - A4249_RS12345 0.38 -0.8
2,477,463 - A4249_RS12345 0.38 +0.2
2,477,463 - A4249_RS12345 0.38 +0.4
2,477,463 - A4249_RS12345 0.38 -0.6
2,477,630 + A4249_RS12345 0.54 -0.3
2,477,630 + A4249_RS12345 0.54 -0.0
2,477,630 + A4249_RS12345 0.54 +0.4
2,477,630 + A4249_RS12345 0.54 -1.3
2,477,630 + A4249_RS12345 0.54 -0.2
2,477,630 + A4249_RS12345 0.54 +0.8
2,477,631 - A4249_RS12345 0.54 -0.6
2,477,631 - A4249_RS12345 0.54 +0.8
2,477,631 - A4249_RS12345 0.54 -0.2
2,477,631 - A4249_RS12345 0.54 +1.1
2,477,909 + A4249_RS12345 0.81 +1.4
2,478,040 + -0.5
2,478,040 + +0.5
2,478,040 + +0.4
2,478,040 + +0.4
2,478,040 + -0.3
2,478,040 + -0.7
2,478,040 + +1.7
2,478,041 - -0.3
2,478,041 - +1.3
2,478,041 - -0.2
2,478,041 - -0.1
2,478,041 - -1.7
2,478,041 - -0.0
2,478,041 - -0.1
2,478,041 - -0.5
2,478,041 - +0.8
2,478,041 - -0.6
2,478,041 - -0.5

Or see this region's nucleotide sequence