Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09690

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09680 and A4249_RS09685 are separated by 45 nucleotidesA4249_RS09685 and A4249_RS09690 are separated by 5 nucleotidesA4249_RS09690 and A4249_RS09695 are separated by 57 nucleotides A4249_RS09680: A4249_RS09680 - transcriptional regulator GcvA, at 1,930,579 to 1,931,508 _RS09680 A4249_RS09685: A4249_RS09685 - NYN domain-containing protein, at 1,931,554 to 1,932,285 _RS09685 A4249_RS09690: A4249_RS09690 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,932,291 to 1,934,204 _RS09690 A4249_RS09695: A4249_RS09695 - polyprenyl synthetase family protein, at 1,934,262 to 1,935,137 _RS09695 Position (kb) 1932 1933 1934 1935Strain fitness (log2 ratio) -2 -1 0 1 2at 1931.303 kb on + strand, within A4249_RS09680at 1931.304 kb on - strand, within A4249_RS09680at 1931.398 kb on + strand, within A4249_RS09680at 1931.398 kb on + strand, within A4249_RS09680at 1931.398 kb on + strand, within A4249_RS09680at 1931.399 kb on - strand, within A4249_RS09680at 1931.399 kb on - strand, within A4249_RS09680at 1931.399 kb on - strand, within A4249_RS09680at 1931.399 kb on - strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.401 kb on + strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.402 kb on - strand, within A4249_RS09680at 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.490 kb on + strandat 1931.491 kb on - strandat 1931.491 kb on - strandat 1931.491 kb on - strandat 1931.491 kb on - strandat 1931.491 kb on - strandat 1931.506 kb on + strandat 1931.506 kb on + strandat 1931.506 kb on + strandat 1931.506 kb on + strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.507 kb on - strandat 1931.677 kb on + strand, within A4249_RS09685at 1931.678 kb on - strand, within A4249_RS09685at 1931.914 kb on + strand, within A4249_RS09685at 1931.914 kb on + strand, within A4249_RS09685at 1931.915 kb on - strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.974 kb on + strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.975 kb on - strand, within A4249_RS09685at 1931.976 kb on + strand, within A4249_RS09685at 1931.976 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.187 kb on + strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.188 kb on - strand, within A4249_RS09685at 1932.194 kb on - strand, within A4249_RS09685at 1932.194 kb on - strand, within A4249_RS09685at 1932.293 kb on - strandat 1932.293 kb on - strandat 1934.277 kb on + strandat 1934.277 kb on + strandat 1934.278 kb on - strandat 1934.278 kb on - strandat 1934.500 kb on + strand, within A4249_RS09695at 1934.500 kb on + strand, within A4249_RS09695at 1934.501 kb on - strand, within A4249_RS09695at 1934.501 kb on - strand, within A4249_RS09695at 1934.501 kb on - strand, within A4249_RS09695at 1934.590 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.830 kb on + strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.831 kb on - strand, within A4249_RS09695at 1934.908 kb on + strand, within A4249_RS09695at 1934.909 kb on - strand, within A4249_RS09695at 1934.946 kb on + strand, within A4249_RS09695at 1934.946 kb on + strand, within A4249_RS09695at 1935.031 kb on + strand, within A4249_RS09695at 1935.031 kb on + strand, within A4249_RS09695at 1935.031 kb on + strand, within A4249_RS09695at 1935.032 kb on - strand, within A4249_RS09695at 1935.199 kb on + strandat 1935.200 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,931,303 + A4249_RS09680 0.78 +0.6
1,931,304 - A4249_RS09680 0.78 +2.2
1,931,398 + A4249_RS09680 0.88 -0.9
1,931,398 + A4249_RS09680 0.88 +0.1
1,931,398 + A4249_RS09680 0.88 +0.9
1,931,399 - A4249_RS09680 0.88 -0.2
1,931,399 - A4249_RS09680 0.88 -0.9
1,931,399 - A4249_RS09680 0.88 +0.3
1,931,399 - A4249_RS09680 0.88 -1.3
1,931,401 + A4249_RS09680 0.88 -0.3
1,931,401 + A4249_RS09680 0.88 -1.5
1,931,401 + A4249_RS09680 0.88 -0.0
1,931,401 + A4249_RS09680 0.88 +1.6
1,931,401 + A4249_RS09680 0.88 +0.7
1,931,401 + A4249_RS09680 0.88 +0.0
1,931,401 + A4249_RS09680 0.88 -0.4
1,931,401 + A4249_RS09680 0.88 +1.9
1,931,401 + A4249_RS09680 0.88 +0.4
1,931,401 + A4249_RS09680 0.88 -0.8
1,931,401 + A4249_RS09680 0.88 -0.5
1,931,402 - A4249_RS09680 0.88 +0.5
1,931,402 - A4249_RS09680 0.88 -1.5
1,931,402 - A4249_RS09680 0.88 -0.5
1,931,402 - A4249_RS09680 0.88 +0.0
1,931,402 - A4249_RS09680 0.88 -0.7
1,931,402 - A4249_RS09680 0.88 +0.2
1,931,402 - A4249_RS09680 0.88 +0.5
1,931,490 + +0.5
1,931,490 + -0.2
1,931,490 + +0.1
1,931,490 + -0.0
1,931,490 + +0.6
1,931,490 + -0.3
1,931,490 + +0.1
1,931,490 + -1.8
1,931,490 + -0.5
1,931,491 - +0.7
1,931,491 - +0.5
1,931,491 - -1.1
1,931,491 - -0.3
1,931,491 - -0.0
1,931,506 + -1.2
1,931,506 + +0.5
1,931,506 + -0.3
1,931,506 + +1.1
1,931,507 - -0.3
1,931,507 - -0.4
1,931,507 - -0.7
1,931,507 - +1.1
1,931,507 - +0.8
1,931,507 - +0.2
1,931,507 - +0.5
1,931,677 + A4249_RS09685 0.17 +0.2
1,931,678 - A4249_RS09685 0.17 -0.9
1,931,914 + A4249_RS09685 0.49 -1.2
1,931,914 + A4249_RS09685 0.49 -2.4
1,931,915 - A4249_RS09685 0.49 +0.4
1,931,974 + A4249_RS09685 0.57 +1.0
1,931,974 + A4249_RS09685 0.57 -0.8
1,931,974 + A4249_RS09685 0.57 +0.8
1,931,974 + A4249_RS09685 0.57 -1.5
1,931,974 + A4249_RS09685 0.57 +0.5
1,931,974 + A4249_RS09685 0.57 -0.3
1,931,974 + A4249_RS09685 0.57 -0.1
1,931,974 + A4249_RS09685 0.57 +0.2
1,931,974 + A4249_RS09685 0.57 +0.4
1,931,975 - A4249_RS09685 0.58 +0.2
1,931,975 - A4249_RS09685 0.58 -1.1
1,931,975 - A4249_RS09685 0.58 -0.4
1,931,975 - A4249_RS09685 0.58 -0.5
1,931,975 - A4249_RS09685 0.58 -0.6
1,931,975 - A4249_RS09685 0.58 -0.7
1,931,975 - A4249_RS09685 0.58 -0.9
1,931,976 + A4249_RS09685 0.58 -0.6
1,931,976 + A4249_RS09685 0.58 -0.3
1,932,187 + A4249_RS09685 0.86 -0.6
1,932,187 + A4249_RS09685 0.86 -0.4
1,932,187 + A4249_RS09685 0.86 +0.2
1,932,187 + A4249_RS09685 0.86 -0.7
1,932,187 + A4249_RS09685 0.86 -0.4
1,932,187 + A4249_RS09685 0.86 -0.3
1,932,187 + A4249_RS09685 0.86 +0.2
1,932,187 + A4249_RS09685 0.86 -0.4
1,932,187 + A4249_RS09685 0.86 +0.4
1,932,187 + A4249_RS09685 0.86 -0.8
1,932,187 + A4249_RS09685 0.86 -0.2
1,932,187 + A4249_RS09685 0.86 +0.5
1,932,187 + A4249_RS09685 0.86 -0.2
1,932,187 + A4249_RS09685 0.86 +0.1
1,932,187 + A4249_RS09685 0.86 +1.6
1,932,187 + A4249_RS09685 0.86 -0.0
1,932,187 + A4249_RS09685 0.86 +0.7
1,932,187 + A4249_RS09685 0.86 +0.2
1,932,188 - A4249_RS09685 0.87 +0.4
1,932,188 - A4249_RS09685 0.87 -1.8
1,932,188 - A4249_RS09685 0.87 -0.6
1,932,188 - A4249_RS09685 0.87 +0.3
1,932,188 - A4249_RS09685 0.87 +0.5
1,932,188 - A4249_RS09685 0.87 +0.5
1,932,194 - A4249_RS09685 0.87 -0.3
1,932,194 - A4249_RS09685 0.87 -0.8
1,932,293 - +0.2
1,932,293 - +0.4
1,934,277 + -0.5
1,934,277 + +0.0
1,934,278 - +0.0
1,934,278 - -0.4
1,934,500 + A4249_RS09695 0.27 -0.1
1,934,500 + A4249_RS09695 0.27 -0.6
1,934,501 - A4249_RS09695 0.27 -0.6
1,934,501 - A4249_RS09695 0.27 +0.1
1,934,501 - A4249_RS09695 0.27 +0.7
1,934,590 + A4249_RS09695 0.37 -1.8
1,934,830 + A4249_RS09695 0.65 -0.2
1,934,830 + A4249_RS09695 0.65 -0.0
1,934,830 + A4249_RS09695 0.65 -0.4
1,934,830 + A4249_RS09695 0.65 -0.4
1,934,830 + A4249_RS09695 0.65 +0.2
1,934,830 + A4249_RS09695 0.65 -0.6
1,934,830 + A4249_RS09695 0.65 +0.8
1,934,830 + A4249_RS09695 0.65 -0.1
1,934,830 + A4249_RS09695 0.65 +0.3
1,934,830 + A4249_RS09695 0.65 +0.4
1,934,831 - A4249_RS09695 0.65 -0.2
1,934,831 - A4249_RS09695 0.65 -0.6
1,934,831 - A4249_RS09695 0.65 +0.2
1,934,831 - A4249_RS09695 0.65 -0.3
1,934,831 - A4249_RS09695 0.65 -0.7
1,934,831 - A4249_RS09695 0.65 +0.5
1,934,831 - A4249_RS09695 0.65 -0.7
1,934,908 + A4249_RS09695 0.74 +0.2
1,934,909 - A4249_RS09695 0.74 -0.1
1,934,946 + A4249_RS09695 0.78 +0.3
1,934,946 + A4249_RS09695 0.78 +0.1
1,935,031 + A4249_RS09695 0.88 -0.4
1,935,031 + A4249_RS09695 0.88 -0.3
1,935,031 + A4249_RS09695 0.88 -0.2
1,935,032 - A4249_RS09695 0.88 +0.8
1,935,199 + -0.7
1,935,200 - +0.3

Or see this region's nucleotide sequence