Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07320

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07315 and A4249_RS07320 are separated by 102 nucleotidesA4249_RS07320 and A4249_RS07325 are separated by 110 nucleotidesA4249_RS07325 and A4249_RS07330 are separated by 66 nucleotidesA4249_RS07330 and A4249_RS07335 are separated by 48 nucleotides A4249_RS07315: A4249_RS07315 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,461,234 to 1,462,523 _RS07315 A4249_RS07320: A4249_RS07320 - hypothetical protein, at 1,462,626 to 1,462,823 _RS07320 A4249_RS07325: A4249_RS07325 - tRNA-Thr, at 1,462,934 to 1,463,008 _RS07325 A4249_RS07330: A4249_RS07330 - hypothetical protein, at 1,463,075 to 1,463,662 _RS07330 A4249_RS07335: A4249_RS07335 - peptide-methionine (R)-S-oxide reductase MsrB, at 1,463,711 to 1,464,205 _RS07335 Position (kb) 1462 1463Strain fitness (log2 ratio) -2 -1 0 1 2at 1462.572 kb on + strandat 1462.573 kb on - strandat 1462.573 kb on - strandat 1462.573 kb on - strandat 1462.796 kb on + strand, within A4249_RS07320at 1462.796 kb on + strand, within A4249_RS07320at 1463.083 kb on - strandat 1463.088 kb on + strandat 1463.088 kb on + strandat 1463.088 kb on + strandat 1463.088 kb on + strandat 1463.088 kb on + strandat 1463.089 kb on - strandat 1463.089 kb on - strandat 1463.089 kb on - strandat 1463.152 kb on + strand, within A4249_RS07330at 1463.152 kb on + strand, within A4249_RS07330at 1463.152 kb on + strand, within A4249_RS07330at 1463.153 kb on - strand, within A4249_RS07330at 1463.153 kb on - strand, within A4249_RS07330at 1463.153 kb on - strand, within A4249_RS07330at 1463.153 kb on - strand, within A4249_RS07330at 1463.211 kb on + strand, within A4249_RS07330at 1463.211 kb on + strand, within A4249_RS07330at 1463.212 kb on - strand, within A4249_RS07330at 1463.212 kb on - strand, within A4249_RS07330at 1463.212 kb on - strand, within A4249_RS07330at 1463.220 kb on + strand, within A4249_RS07330at 1463.220 kb on + strand, within A4249_RS07330at 1463.220 kb on + strand, within A4249_RS07330at 1463.220 kb on + strand, within A4249_RS07330at 1463.221 kb on - strand, within A4249_RS07330at 1463.221 kb on - strand, within A4249_RS07330at 1463.244 kb on + strand, within A4249_RS07330at 1463.245 kb on - strand, within A4249_RS07330at 1463.260 kb on - strand, within A4249_RS07330at 1463.289 kb on + strand, within A4249_RS07330at 1463.289 kb on + strand, within A4249_RS07330at 1463.290 kb on - strand, within A4249_RS07330at 1463.294 kb on + strand, within A4249_RS07330at 1463.294 kb on + strand, within A4249_RS07330at 1463.294 kb on + strand, within A4249_RS07330at 1463.294 kb on + strand, within A4249_RS07330at 1463.294 kb on + strand, within A4249_RS07330at 1463.294 kb on + strand, within A4249_RS07330at 1463.294 kb on + strand, within A4249_RS07330at 1463.295 kb on - strand, within A4249_RS07330at 1463.295 kb on - strand, within A4249_RS07330at 1463.295 kb on - strand, within A4249_RS07330at 1463.343 kb on + strand, within A4249_RS07330at 1463.343 kb on + strand, within A4249_RS07330at 1463.343 kb on + strand, within A4249_RS07330at 1463.343 kb on + strand, within A4249_RS07330at 1463.343 kb on + strand, within A4249_RS07330at 1463.344 kb on - strand, within A4249_RS07330at 1463.344 kb on - strand, within A4249_RS07330at 1463.344 kb on - strand, within A4249_RS07330at 1463.662 kb on + strandat 1463.662 kb on + strandat 1463.662 kb on + strandat 1463.663 kb on - strandat 1463.663 kb on - strandat 1463.663 kb on - strandat 1463.663 kb on - strandat 1463.688 kb on + strandat 1463.688 kb on + strandat 1463.688 kb on + strandat 1463.688 kb on + strandat 1463.688 kb on + strandat 1463.689 kb on - strandat 1463.689 kb on - strandat 1463.689 kb on - strandat 1463.689 kb on - strandat 1463.689 kb on - strandat 1463.797 kb on - strand, within A4249_RS07335at 1463.797 kb on - strand, within A4249_RS07335

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,462,572 + -0.6
1,462,573 - -0.2
1,462,573 - -0.1
1,462,573 - -0.0
1,462,796 + A4249_RS07320 0.86 +0.1
1,462,796 + A4249_RS07320 0.86 -0.8
1,463,083 - -0.7
1,463,088 + -1.6
1,463,088 + -1.0
1,463,088 + -1.0
1,463,088 + +0.5
1,463,088 + -0.8
1,463,089 - -0.5
1,463,089 - -0.1
1,463,089 - -2.2
1,463,152 + A4249_RS07330 0.13 +1.3
1,463,152 + A4249_RS07330 0.13 +0.6
1,463,152 + A4249_RS07330 0.13 +1.1
1,463,153 - A4249_RS07330 0.13 +1.0
1,463,153 - A4249_RS07330 0.13 -2.0
1,463,153 - A4249_RS07330 0.13 +0.1
1,463,153 - A4249_RS07330 0.13 -0.6
1,463,211 + A4249_RS07330 0.23 -0.3
1,463,211 + A4249_RS07330 0.23 +0.4
1,463,212 - A4249_RS07330 0.23 +1.2
1,463,212 - A4249_RS07330 0.23 +0.5
1,463,212 - A4249_RS07330 0.23 -0.1
1,463,220 + A4249_RS07330 0.25 -2.2
1,463,220 + A4249_RS07330 0.25 +0.9
1,463,220 + A4249_RS07330 0.25 +0.7
1,463,220 + A4249_RS07330 0.25 +0.1
1,463,221 - A4249_RS07330 0.25 +1.3
1,463,221 - A4249_RS07330 0.25 +0.2
1,463,244 + A4249_RS07330 0.29 +0.6
1,463,245 - A4249_RS07330 0.29 +0.9
1,463,260 - A4249_RS07330 0.31 -0.1
1,463,289 + A4249_RS07330 0.36 -1.3
1,463,289 + A4249_RS07330 0.36 +0.0
1,463,290 - A4249_RS07330 0.37 +0.6
1,463,294 + A4249_RS07330 0.37 -0.1
1,463,294 + A4249_RS07330 0.37 +0.1
1,463,294 + A4249_RS07330 0.37 +1.4
1,463,294 + A4249_RS07330 0.37 +0.7
1,463,294 + A4249_RS07330 0.37 +0.2
1,463,294 + A4249_RS07330 0.37 -0.4
1,463,294 + A4249_RS07330 0.37 +0.5
1,463,295 - A4249_RS07330 0.37 -1.2
1,463,295 - A4249_RS07330 0.37 +1.0
1,463,295 - A4249_RS07330 0.37 -0.5
1,463,343 + A4249_RS07330 0.46 +1.0
1,463,343 + A4249_RS07330 0.46 -0.8
1,463,343 + A4249_RS07330 0.46 +0.2
1,463,343 + A4249_RS07330 0.46 -2.1
1,463,343 + A4249_RS07330 0.46 -0.7
1,463,344 - A4249_RS07330 0.46 +0.7
1,463,344 - A4249_RS07330 0.46 +0.3
1,463,344 - A4249_RS07330 0.46 +2.4
1,463,662 + -0.4
1,463,662 + +0.7
1,463,662 + -0.5
1,463,663 - -0.1
1,463,663 - -0.2
1,463,663 - -1.7
1,463,663 - -0.4
1,463,688 + +0.5
1,463,688 + -0.8
1,463,688 + +0.4
1,463,688 + -0.0
1,463,688 + -0.4
1,463,689 - +0.1
1,463,689 - +0.5
1,463,689 - +0.5
1,463,689 - -0.3
1,463,689 - -0.3
1,463,797 - A4249_RS07335 0.17 -1.0
1,463,797 - A4249_RS07335 0.17 -0.8

Or see this region's nucleotide sequence