Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06185

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06175 and A4249_RS06180 are separated by 118 nucleotidesA4249_RS06180 and A4249_RS06185 overlap by 20 nucleotidesA4249_RS06185 and A4249_RS06190 overlap by 2 nucleotides A4249_RS06175: A4249_RS06175 - indole-3-glycerol phosphate synthase TrpC, at 1,256,379 to 1,257,173 _RS06175 A4249_RS06180: A4249_RS06180 - transcriptional repressor LexA, at 1,257,292 to 1,257,990 _RS06180 A4249_RS06185: A4249_RS06185 - ComEC/Rec2 family competence protein, at 1,257,971 to 1,260,157 _RS06185 A4249_RS06190: A4249_RS06190 - glutamate--tRNA ligase, at 1,260,156 to 1,261,571 _RS06190 Position (kb) 1257 1258 1259 1260 1261Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1257.171 kb on + strandat 1257.171 kb on + strandat 1257.202 kb on + strandat 1257.202 kb on + strandat 1257.203 kb on - strandat 1257.203 kb on - strandat 1257.213 kb on + strandat 1257.682 kb on + strand, within A4249_RS06180at 1257.721 kb on + strand, within A4249_RS06180at 1257.721 kb on + strand, within A4249_RS06180at 1257.722 kb on - strand, within A4249_RS06180at 1257.722 kb on - strand, within A4249_RS06180at 1257.913 kb on + strand, within A4249_RS06180at 1257.913 kb on + strand, within A4249_RS06180at 1257.913 kb on + strand, within A4249_RS06180at 1257.913 kb on + strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.982 kb on + strandat 1258.205 kb on + strand, within A4249_RS06185at 1258.206 kb on - strand, within A4249_RS06185at 1258.379 kb on + strand, within A4249_RS06185at 1258.380 kb on - strand, within A4249_RS06185at 1258.380 kb on - strand, within A4249_RS06185at 1258.380 kb on - strand, within A4249_RS06185at 1258.380 kb on - strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.575 kb on + strand, within A4249_RS06185at 1258.576 kb on - strand, within A4249_RS06185at 1258.576 kb on - strand, within A4249_RS06185at 1258.576 kb on - strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.782 kb on + strand, within A4249_RS06185at 1258.783 kb on - strand, within A4249_RS06185at 1258.783 kb on - strand, within A4249_RS06185at 1258.783 kb on - strand, within A4249_RS06185at 1258.783 kb on - strand, within A4249_RS06185at 1258.783 kb on - strand, within A4249_RS06185at 1258.783 kb on - strand, within A4249_RS06185at 1258.783 kb on - strand, within A4249_RS06185at 1258.810 kb on + strand, within A4249_RS06185at 1258.811 kb on - strand, within A4249_RS06185at 1258.811 kb on - strand, within A4249_RS06185at 1258.914 kb on - strand, within A4249_RS06185at 1259.015 kb on + strand, within A4249_RS06185at 1259.015 kb on + strand, within A4249_RS06185at 1259.016 kb on - strand, within A4249_RS06185at 1259.154 kb on + strand, within A4249_RS06185at 1259.154 kb on + strand, within A4249_RS06185at 1259.154 kb on + strand, within A4249_RS06185at 1259.155 kb on - strand, within A4249_RS06185at 1259.155 kb on - strand, within A4249_RS06185at 1259.155 kb on - strand, within A4249_RS06185at 1259.155 kb on - strand, within A4249_RS06185at 1259.281 kb on + strand, within A4249_RS06185at 1259.281 kb on + strand, within A4249_RS06185at 1259.282 kb on - strand, within A4249_RS06185at 1259.282 kb on - strand, within A4249_RS06185at 1259.357 kb on - strand, within A4249_RS06185at 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.998 kb on - strandat 1259.998 kb on - strandat 1259.998 kb on - strandat 1259.998 kb on - strandat 1260.036 kb on - strandat 1260.104 kb on - strandat 1260.104 kb on - strandat 1260.104 kb on - strandat 1260.125 kb on + strandat 1260.126 kb on - strandat 1260.126 kb on - strandat 1260.126 kb on - strandat 1260.126 kb on - strandat 1260.127 kb on + strandat 1260.127 kb on + strandat 1260.128 kb on - strandat 1260.128 kb on - strandat 1260.128 kb on - strandat 1260.128 kb on - strandat 1260.128 kb on - strandat 1260.140 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,257,171 + +0.1
1,257,171 + +0.2
1,257,202 + -0.7
1,257,202 + -0.7
1,257,203 - +0.1
1,257,203 - +0.6
1,257,213 + +0.3
1,257,682 + A4249_RS06180 0.56 +0.1
1,257,721 + A4249_RS06180 0.61 -0.0
1,257,721 + A4249_RS06180 0.61 -2.8
1,257,722 - A4249_RS06180 0.62 +0.5
1,257,722 - A4249_RS06180 0.62 -0.8
1,257,913 + A4249_RS06180 0.89 +0.2
1,257,913 + A4249_RS06180 0.89 -1.2
1,257,913 + A4249_RS06180 0.89 +0.9
1,257,913 + A4249_RS06180 0.89 +0.5
1,257,914 - A4249_RS06180 0.89 -0.1
1,257,914 - A4249_RS06180 0.89 -1.1
1,257,914 - A4249_RS06180 0.89 +0.0
1,257,914 - A4249_RS06180 0.89 +0.7
1,257,914 - A4249_RS06180 0.89 -1.5
1,257,914 - A4249_RS06180 0.89 -0.5
1,257,914 - A4249_RS06180 0.89 -0.3
1,257,914 - A4249_RS06180 0.89 +0.1
1,257,982 + -0.6
1,258,205 + A4249_RS06185 0.11 -0.2
1,258,206 - A4249_RS06185 0.11 -0.4
1,258,379 + A4249_RS06185 0.19 +0.8
1,258,380 - A4249_RS06185 0.19 +0.1
1,258,380 - A4249_RS06185 0.19 -0.1
1,258,380 - A4249_RS06185 0.19 -1.6
1,258,380 - A4249_RS06185 0.19 -0.2
1,258,575 + A4249_RS06185 0.28 +0.5
1,258,575 + A4249_RS06185 0.28 -0.7
1,258,575 + A4249_RS06185 0.28 +0.1
1,258,575 + A4249_RS06185 0.28 +0.0
1,258,575 + A4249_RS06185 0.28 -2.8
1,258,575 + A4249_RS06185 0.28 -0.8
1,258,575 + A4249_RS06185 0.28 -0.1
1,258,575 + A4249_RS06185 0.28 +0.2
1,258,575 + A4249_RS06185 0.28 -0.1
1,258,575 + A4249_RS06185 0.28 -0.3
1,258,575 + A4249_RS06185 0.28 -0.9
1,258,575 + A4249_RS06185 0.28 +0.6
1,258,575 + A4249_RS06185 0.28 +0.6
1,258,575 + A4249_RS06185 0.28 -0.1
1,258,575 + A4249_RS06185 0.28 -0.5
1,258,576 - A4249_RS06185 0.28 +0.5
1,258,576 - A4249_RS06185 0.28 -0.3
1,258,576 - A4249_RS06185 0.28 +0.3
1,258,782 + A4249_RS06185 0.37 -0.4
1,258,782 + A4249_RS06185 0.37 -0.3
1,258,782 + A4249_RS06185 0.37 +0.2
1,258,782 + A4249_RS06185 0.37 -0.6
1,258,782 + A4249_RS06185 0.37 +0.3
1,258,782 + A4249_RS06185 0.37 -0.2
1,258,782 + A4249_RS06185 0.37 +1.7
1,258,782 + A4249_RS06185 0.37 +0.7
1,258,782 + A4249_RS06185 0.37 -0.3
1,258,782 + A4249_RS06185 0.37 -0.0
1,258,782 + A4249_RS06185 0.37 +0.1
1,258,782 + A4249_RS06185 0.37 -0.7
1,258,782 + A4249_RS06185 0.37 -0.3
1,258,783 - A4249_RS06185 0.37 -0.0
1,258,783 - A4249_RS06185 0.37 -0.9
1,258,783 - A4249_RS06185 0.37 -1.0
1,258,783 - A4249_RS06185 0.37 -0.4
1,258,783 - A4249_RS06185 0.37 -0.6
1,258,783 - A4249_RS06185 0.37 -0.0
1,258,783 - A4249_RS06185 0.37 +0.1
1,258,810 + A4249_RS06185 0.38 -0.7
1,258,811 - A4249_RS06185 0.38 +0.3
1,258,811 - A4249_RS06185 0.38 +0.9
1,258,914 - A4249_RS06185 0.43 -1.1
1,259,015 + A4249_RS06185 0.48 -0.5
1,259,015 + A4249_RS06185 0.48 -0.3
1,259,016 - A4249_RS06185 0.48 +0.0
1,259,154 + A4249_RS06185 0.54 +0.6
1,259,154 + A4249_RS06185 0.54 +0.9
1,259,154 + A4249_RS06185 0.54 -0.3
1,259,155 - A4249_RS06185 0.54 -0.1
1,259,155 - A4249_RS06185 0.54 +0.1
1,259,155 - A4249_RS06185 0.54 -2.0
1,259,155 - A4249_RS06185 0.54 +0.1
1,259,281 + A4249_RS06185 0.60 -0.8
1,259,281 + A4249_RS06185 0.60 +0.2
1,259,282 - A4249_RS06185 0.60 -0.7
1,259,282 - A4249_RS06185 0.60 +0.2
1,259,357 - A4249_RS06185 0.63 -1.2
1,259,997 + -0.6
1,259,997 + +0.9
1,259,997 + +0.4
1,259,997 + -0.8
1,259,997 + +2.0
1,259,997 + +0.8
1,259,997 + -0.5
1,259,998 - -0.4
1,259,998 - -0.7
1,259,998 - +1.8
1,259,998 - -1.0
1,260,036 - -0.8
1,260,104 - -0.7
1,260,104 - +0.2
1,260,104 - -0.3
1,260,125 + -0.8
1,260,126 - +0.5
1,260,126 - +0.2
1,260,126 - +0.2
1,260,126 - -0.7
1,260,127 + +1.5
1,260,127 + -1.2
1,260,128 - -0.7
1,260,128 - +0.3
1,260,128 - -0.1
1,260,128 - +0.8
1,260,128 - +0.4
1,260,140 + -0.6

Or see this region's nucleotide sequence