Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05985

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05975 and A4249_RS05980 are separated by 139 nucleotidesA4249_RS05980 and A4249_RS05985 are separated by 5 nucleotidesA4249_RS05985 and A4249_RS05990 are separated by 91 nucleotidesA4249_RS05990 and A4249_RS05995 are separated by 75 nucleotides A4249_RS05975: A4249_RS05975 - phosphate acyltransferase PlsX, at 1,218,155 to 1,219,198 _RS05975 A4249_RS05980: A4249_RS05980 - DUF177 domain-containing protein, at 1,219,338 to 1,219,856 _RS05980 A4249_RS05985: A4249_RS05985 - ubiquinol-cytochrome C chaperone family protein, at 1,219,862 to 1,220,386 _RS05985 A4249_RS05990: A4249_RS05990 - outer membrane protein assembly factor BamE, at 1,220,478 to 1,220,957 _RS05990 A4249_RS05995: A4249_RS05995 - sodium-translocating pyrophosphatase, at 1,221,033 to 1,223,180 _RS05995 Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -2 -1 0 1 2at 1219.328 kb on + strandat 1219.328 kb on + strandat 1219.329 kb on - strandat 1219.329 kb on - strandat 1219.329 kb on - strandat 1219.329 kb on - strandat 1219.478 kb on - strand, within A4249_RS05980at 1219.478 kb on - strand, within A4249_RS05980at 1219.478 kb on - strand, within A4249_RS05980at 1219.478 kb on - strand, within A4249_RS05980at 1219.837 kb on + strandat 1219.838 kb on - strandat 1219.942 kb on - strand, within A4249_RS05985at 1219.984 kb on - strand, within A4249_RS05985at 1219.984 kb on - strand, within A4249_RS05985at 1219.984 kb on - strand, within A4249_RS05985at 1220.046 kb on + strand, within A4249_RS05985at 1220.046 kb on + strand, within A4249_RS05985at 1220.047 kb on - strand, within A4249_RS05985at 1220.047 kb on - strand, within A4249_RS05985at 1220.047 kb on - strand, within A4249_RS05985at 1220.154 kb on + strand, within A4249_RS05985at 1220.154 kb on + strand, within A4249_RS05985at 1220.154 kb on + strand, within A4249_RS05985at 1220.154 kb on + strand, within A4249_RS05985at 1220.154 kb on + strand, within A4249_RS05985at 1220.154 kb on + strand, within A4249_RS05985at 1220.154 kb on + strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.155 kb on - strand, within A4249_RS05985at 1220.245 kb on - strand, within A4249_RS05985at 1220.245 kb on - strand, within A4249_RS05985at 1220.292 kb on + strand, within A4249_RS05985at 1220.292 kb on + strand, within A4249_RS05985at 1220.292 kb on + strand, within A4249_RS05985at 1220.293 kb on - strand, within A4249_RS05985at 1220.293 kb on - strand, within A4249_RS05985at 1220.293 kb on - strand, within A4249_RS05985at 1220.293 kb on - strand, within A4249_RS05985at 1220.293 kb on - strand, within A4249_RS05985at 1220.331 kb on + strand, within A4249_RS05985at 1220.332 kb on - strand, within A4249_RS05985at 1220.955 kb on + strandat 1220.956 kb on - strandat 1221.015 kb on + strandat 1221.030 kb on - strandat 1221.030 kb on - strandat 1221.030 kb on - strandat 1221.034 kb on + strandat 1221.034 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.125 kb on + strandat 1221.126 kb on - strandat 1221.126 kb on - strandat 1221.126 kb on - strandat 1221.126 kb on - strandat 1221.126 kb on - strandat 1221.126 kb on - strandat 1221.126 kb on - strandat 1221.126 kb on - strandat 1221.126 kb on - strandat 1221.126 kb on - strandat 1221.131 kb on + strandat 1221.131 kb on + strandat 1221.131 kb on + strandat 1221.131 kb on + strandat 1221.131 kb on + strandat 1221.132 kb on - strandat 1221.132 kb on - strandat 1221.132 kb on - strandat 1221.132 kb on - strandat 1221.132 kb on - strandat 1221.133 kb on + strandat 1221.133 kb on + strandat 1221.133 kb on + strandat 1221.134 kb on - strandat 1221.134 kb on - strandat 1221.134 kb on - strandat 1221.134 kb on - strandat 1221.134 kb on - strandat 1221.134 kb on - strandat 1221.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,219,328 + +0.0
1,219,328 + -1.6
1,219,329 - +1.0
1,219,329 - -1.3
1,219,329 - -1.1
1,219,329 - +1.0
1,219,478 - A4249_RS05980 0.27 -2.2
1,219,478 - A4249_RS05980 0.27 -0.8
1,219,478 - A4249_RS05980 0.27 +0.0
1,219,478 - A4249_RS05980 0.27 -0.0
1,219,837 + +1.0
1,219,838 - +0.6
1,219,942 - A4249_RS05985 0.15 +1.0
1,219,984 - A4249_RS05985 0.23 -1.0
1,219,984 - A4249_RS05985 0.23 +0.1
1,219,984 - A4249_RS05985 0.23 -0.1
1,220,046 + A4249_RS05985 0.35 -0.4
1,220,046 + A4249_RS05985 0.35 -0.6
1,220,047 - A4249_RS05985 0.35 +0.8
1,220,047 - A4249_RS05985 0.35 -0.1
1,220,047 - A4249_RS05985 0.35 -1.0
1,220,154 + A4249_RS05985 0.56 -1.0
1,220,154 + A4249_RS05985 0.56 +0.3
1,220,154 + A4249_RS05985 0.56 +0.5
1,220,154 + A4249_RS05985 0.56 -0.1
1,220,154 + A4249_RS05985 0.56 +1.3
1,220,154 + A4249_RS05985 0.56 -0.6
1,220,154 + A4249_RS05985 0.56 +0.4
1,220,155 - A4249_RS05985 0.56 +0.5
1,220,155 - A4249_RS05985 0.56 +0.3
1,220,155 - A4249_RS05985 0.56 -0.5
1,220,155 - A4249_RS05985 0.56 -0.4
1,220,155 - A4249_RS05985 0.56 -1.3
1,220,155 - A4249_RS05985 0.56 +0.4
1,220,155 - A4249_RS05985 0.56 +0.1
1,220,155 - A4249_RS05985 0.56 +1.8
1,220,155 - A4249_RS05985 0.56 -0.4
1,220,155 - A4249_RS05985 0.56 +1.1
1,220,155 - A4249_RS05985 0.56 +0.2
1,220,155 - A4249_RS05985 0.56 +1.3
1,220,245 - A4249_RS05985 0.73 -0.5
1,220,245 - A4249_RS05985 0.73 +0.6
1,220,292 + A4249_RS05985 0.82 +0.7
1,220,292 + A4249_RS05985 0.82 +0.8
1,220,292 + A4249_RS05985 0.82 -0.2
1,220,293 - A4249_RS05985 0.82 +0.5
1,220,293 - A4249_RS05985 0.82 -0.3
1,220,293 - A4249_RS05985 0.82 -0.1
1,220,293 - A4249_RS05985 0.82 -0.1
1,220,293 - A4249_RS05985 0.82 -0.6
1,220,331 + A4249_RS05985 0.89 +1.1
1,220,332 - A4249_RS05985 0.90 +0.3
1,220,955 + -0.9
1,220,956 - -0.1
1,221,015 + -1.0
1,221,030 - -1.5
1,221,030 - -0.4
1,221,030 - +0.3
1,221,034 + -1.0
1,221,034 + +0.9
1,221,125 + -0.3
1,221,125 + +0.2
1,221,125 + +0.6
1,221,125 + -0.1
1,221,125 + -0.9
1,221,125 + -0.4
1,221,125 + +0.6
1,221,125 + +0.5
1,221,125 + +0.3
1,221,125 + -0.7
1,221,125 + -1.0
1,221,125 + -0.8
1,221,125 + -0.0
1,221,125 + +0.6
1,221,125 + +0.7
1,221,126 - +0.3
1,221,126 - -0.6
1,221,126 - +0.4
1,221,126 - -0.3
1,221,126 - -0.7
1,221,126 - -0.2
1,221,126 - +0.2
1,221,126 - +0.7
1,221,126 - -1.8
1,221,126 - -0.1
1,221,131 + +0.1
1,221,131 + -0.6
1,221,131 + +0.1
1,221,131 + -0.4
1,221,131 + +0.3
1,221,132 - -0.0
1,221,132 - -0.1
1,221,132 - -1.1
1,221,132 - +0.6
1,221,132 - +0.6
1,221,133 + +0.7
1,221,133 + +0.7
1,221,133 + -0.2
1,221,134 - -0.8
1,221,134 - -1.0
1,221,134 - +0.0
1,221,134 - -0.7
1,221,134 - -0.8
1,221,134 - -0.2
1,221,134 - -0.1

Or see this region's nucleotide sequence