Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05675

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05670 and A4249_RS05675 are separated by 80 nucleotidesA4249_RS05675 and A4249_RS05680 are separated by 114 nucleotidesA4249_RS05680 and A4249_RS05685 are separated by 35 nucleotides A4249_RS05670: A4249_RS05670 - type I glutamate--ammonia ligase, at 1,159,713 to 1,161,119 _RS05670 A4249_RS05675: A4249_RS05675 - P-II family nitrogen regulator, at 1,161,200 to 1,161,538 _RS05675 A4249_RS05680: A4249_RS05680 - NAD(P)H-hydrate dehydratase, at 1,161,653 to 1,162,483 _RS05680 A4249_RS05685: A4249_RS05685 - error-prone DNA polymerase, at 1,162,519 to 1,165,872 _RS05685 Position (kb) 1161 1162Strain fitness (log2 ratio) -2 -1 0 1at 1161.192 kb on + strandat 1161.193 kb on - strandat 1161.657 kb on + strandat 1161.657 kb on + strandat 1161.657 kb on + strandat 1161.657 kb on + strandat 1161.658 kb on - strandat 1161.658 kb on - strandat 1161.658 kb on - strandat 1161.658 kb on - strandat 1161.912 kb on + strand, within A4249_RS05680at 1161.912 kb on + strand, within A4249_RS05680at 1161.912 kb on + strand, within A4249_RS05680at 1161.913 kb on - strand, within A4249_RS05680at 1161.913 kb on - strand, within A4249_RS05680at 1161.913 kb on - strand, within A4249_RS05680at 1161.913 kb on - strand, within A4249_RS05680at 1161.966 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.433 kb on + strandat 1162.433 kb on + strandat 1162.433 kb on + strandat 1162.433 kb on + strandat 1162.433 kb on + strandat 1162.433 kb on + strandat 1162.433 kb on + strandat 1162.433 kb on + strandat 1162.433 kb on + strandat 1162.434 kb on - strandat 1162.434 kb on - strandat 1162.434 kb on - strandat 1162.434 kb on - strandat 1162.434 kb on - strandat 1162.434 kb on - strandat 1162.471 kb on + strandat 1162.533 kb on + strandat 1162.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,161,192 + -0.2
1,161,193 - -0.3
1,161,657 + +0.2
1,161,657 + +0.2
1,161,657 + -0.2
1,161,657 + +0.3
1,161,658 - -0.2
1,161,658 - +0.3
1,161,658 - -0.9
1,161,658 - +0.4
1,161,912 + A4249_RS05680 0.31 +1.1
1,161,912 + A4249_RS05680 0.31 +0.4
1,161,912 + A4249_RS05680 0.31 -0.9
1,161,913 - A4249_RS05680 0.31 +1.4
1,161,913 - A4249_RS05680 0.31 +0.0
1,161,913 - A4249_RS05680 0.31 +1.5
1,161,913 - A4249_RS05680 0.31 -0.4
1,161,966 + A4249_RS05680 0.38 -0.3
1,162,071 + A4249_RS05680 0.50 +1.5
1,162,071 + A4249_RS05680 0.50 -0.1
1,162,071 + A4249_RS05680 0.50 -0.9
1,162,071 + A4249_RS05680 0.50 -0.4
1,162,071 + A4249_RS05680 0.50 +0.5
1,162,072 - A4249_RS05680 0.50 -0.2
1,162,072 - A4249_RS05680 0.50 -0.2
1,162,072 - A4249_RS05680 0.50 +0.1
1,162,072 - A4249_RS05680 0.50 -1.2
1,162,072 - A4249_RS05680 0.50 +0.5
1,162,072 - A4249_RS05680 0.50 +0.1
1,162,072 - A4249_RS05680 0.50 +0.3
1,162,433 + -0.0
1,162,433 + -1.8
1,162,433 + +0.3
1,162,433 + -0.3
1,162,433 + -0.7
1,162,433 + +0.4
1,162,433 + -0.5
1,162,433 + -0.0
1,162,433 + -0.1
1,162,434 - +0.3
1,162,434 - +0.5
1,162,434 - -0.8
1,162,434 - +0.5
1,162,434 - -1.4
1,162,434 - -0.3
1,162,471 + -0.6
1,162,533 + +0.3
1,162,534 - +1.6

Or see this region's nucleotide sequence