Experiment: Hypoxanthine 0.7347 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04535 and A4249_RS04540 are separated by 107 nucleotides A4249_RS04540 and A4249_RS04545 are separated by 142 nucleotides A4249_RS04545 and A4249_RS04550 are separated by 4 nucleotides A4249_RS04550 and A4249_RS04555 are separated by 41 nucleotides
A4249_RS04535: A4249_RS04535 - DUF1343 domain-containing protein, at 941,687 to 942,889
_RS04535
A4249_RS04540: A4249_RS04540 - alkyl hydroperoxide reductase subunit C, at 942,997 to 943,560
_RS04540
A4249_RS04545: A4249_RS04545 - alkyl hydroperoxide reductase subunit F, at 943,703 to 945,292
_RS04545
A4249_RS04550: A4249_RS04550 - YdeI/OmpD-associated family protein, at 945,297 to 945,551
_RS04550
A4249_RS04555: A4249_RS04555 - transporter, at 945,593 to 946,405
_RS04555
Position (kb) 943
944
945
946 Strain fitness (log2 ratio) -2
-1
0
1
2 at 942.731 kb on + strand, within A4249_RS04535 at 942.732 kb on - strand, within A4249_RS04535 at 942.885 kb on - strand at 942.885 kb on - strand at 942.907 kb on + strand at 942.938 kb on + strand at 943.042 kb on + strand at 943.042 kb on + strand at 943.042 kb on + strand at 943.042 kb on + strand at 943.042 kb on + strand at 943.043 kb on - strand at 943.043 kb on - strand at 943.044 kb on + strand at 943.044 kb on + strand at 943.044 kb on + strand at 943.044 kb on + strand at 943.044 kb on + strand at 943.045 kb on - strand at 943.112 kb on - strand, within A4249_RS04540 at 943.168 kb on + strand, within A4249_RS04540 at 943.168 kb on + strand, within A4249_RS04540 at 943.201 kb on + strand, within A4249_RS04540 at 943.201 kb on + strand, within A4249_RS04540 at 943.201 kb on + strand, within A4249_RS04540 at 943.201 kb on + strand, within A4249_RS04540 at 943.201 kb on + strand, within A4249_RS04540 at 943.201 kb on + strand, within A4249_RS04540 at 943.201 kb on + strand, within A4249_RS04540 at 943.202 kb on - strand, within A4249_RS04540 at 943.202 kb on - strand, within A4249_RS04540 at 943.202 kb on - strand, within A4249_RS04540 at 943.202 kb on - strand, within A4249_RS04540 at 943.202 kb on - strand, within A4249_RS04540 at 943.276 kb on + strand, within A4249_RS04540 at 943.277 kb on - strand, within A4249_RS04540 at 943.277 kb on - strand, within A4249_RS04540 at 943.277 kb on - strand, within A4249_RS04540 at 943.465 kb on + strand, within A4249_RS04540 at 943.465 kb on + strand, within A4249_RS04540 at 943.465 kb on + strand, within A4249_RS04540 at 943.465 kb on + strand, within A4249_RS04540 at 943.465 kb on + strand, within A4249_RS04540 at 943.465 kb on + strand, within A4249_RS04540 at 943.465 kb on + strand, within A4249_RS04540 at 943.465 kb on + strand, within A4249_RS04540 at 943.466 kb on - strand, within A4249_RS04540 at 943.466 kb on - strand, within A4249_RS04540 at 943.466 kb on - strand, within A4249_RS04540 at 943.466 kb on - strand, within A4249_RS04540 at 943.558 kb on + strand at 943.558 kb on + strand at 943.558 kb on + strand at 943.558 kb on + strand at 943.559 kb on - strand at 943.559 kb on - strand at 943.559 kb on - strand at 943.559 kb on - strand at 943.569 kb on - strand at 943.636 kb on + strand at 943.636 kb on + strand at 943.636 kb on + strand at 943.636 kb on + strand at 943.637 kb on - strand at 943.707 kb on + strand at 943.707 kb on + strand at 943.707 kb on + strand at 943.707 kb on + strand at 943.707 kb on + strand at 943.708 kb on - strand at 943.871 kb on + strand, within A4249_RS04545 at 943.871 kb on + strand, within A4249_RS04545 at 943.872 kb on - strand, within A4249_RS04545 at 944.057 kb on + strand, within A4249_RS04545 at 944.057 kb on + strand, within A4249_RS04545 at 944.057 kb on + strand, within A4249_RS04545 at 944.057 kb on + strand, within A4249_RS04545 at 944.057 kb on + strand, within A4249_RS04545 at 944.057 kb on + strand, within A4249_RS04545 at 944.057 kb on + strand, within A4249_RS04545 at 944.058 kb on - strand, within A4249_RS04545 at 944.058 kb on - strand, within A4249_RS04545 at 944.058 kb on - strand, within A4249_RS04545 at 944.058 kb on - strand, within A4249_RS04545 at 944.058 kb on - strand, within A4249_RS04545 at 944.058 kb on - strand, within A4249_RS04545 at 944.058 kb on - strand, within A4249_RS04545 at 944.058 kb on - strand, within A4249_RS04545 at 944.072 kb on + strand, within A4249_RS04545 at 944.072 kb on + strand, within A4249_RS04545 at 944.073 kb on - strand, within A4249_RS04545 at 944.073 kb on - strand, within A4249_RS04545 at 944.073 kb on - strand, within A4249_RS04545 at 944.073 kb on - strand, within A4249_RS04545 at 944.073 kb on - strand, within A4249_RS04545 at 944.073 kb on - strand, within A4249_RS04545 at 944.073 kb on - strand, within A4249_RS04545 at 944.073 kb on - strand, within A4249_RS04545 at 944.073 kb on - strand, within A4249_RS04545 at 944.137 kb on + strand, within A4249_RS04545 at 944.137 kb on + strand, within A4249_RS04545 at 944.138 kb on - strand, within A4249_RS04545 at 944.180 kb on - strand, within A4249_RS04545 at 944.180 kb on - strand, within A4249_RS04545 at 944.390 kb on + strand, within A4249_RS04545 at 944.390 kb on + strand, within A4249_RS04545 at 944.390 kb on + strand, within A4249_RS04545 at 944.390 kb on + strand, within A4249_RS04545 at 944.390 kb on + strand, within A4249_RS04545 at 944.390 kb on + strand, within A4249_RS04545 at 944.390 kb on + strand, within A4249_RS04545 at 944.390 kb on + strand, within A4249_RS04545 at 944.390 kb on + strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.391 kb on - strand, within A4249_RS04545 at 944.392 kb on + strand, within A4249_RS04545 at 944.393 kb on - strand, within A4249_RS04545 at 944.489 kb on + strand, within A4249_RS04545 at 944.489 kb on + strand, within A4249_RS04545 at 944.489 kb on + strand, within A4249_RS04545 at 944.489 kb on + strand, within A4249_RS04545 at 944.490 kb on - strand, within A4249_RS04545 at 944.490 kb on - strand, within A4249_RS04545 at 944.490 kb on - strand, within A4249_RS04545 at 944.541 kb on - strand, within A4249_RS04545 at 944.541 kb on - strand, within A4249_RS04545 at 944.711 kb on + strand, within A4249_RS04545 at 944.711 kb on + strand, within A4249_RS04545 at 944.712 kb on - strand, within A4249_RS04545 at 944.732 kb on + strand, within A4249_RS04545 at 944.732 kb on + strand, within A4249_RS04545 at 944.858 kb on + strand, within A4249_RS04545 at 944.859 kb on - strand, within A4249_RS04545 at 944.859 kb on - strand, within A4249_RS04545 at 944.987 kb on + strand, within A4249_RS04545 at 944.987 kb on + strand, within A4249_RS04545 at 944.987 kb on + strand, within A4249_RS04545 at 944.988 kb on - strand, within A4249_RS04545 at 944.988 kb on - strand, within A4249_RS04545 at 944.988 kb on - strand, within A4249_RS04545 at 944.988 kb on - strand, within A4249_RS04545 at 945.182 kb on + strand at 945.182 kb on + strand at 945.182 kb on + strand at 945.182 kb on + strand at 945.183 kb on - strand at 945.183 kb on - strand at 945.183 kb on - strand at 945.184 kb on + strand at 945.184 kb on + strand at 945.184 kb on + strand at 945.184 kb on + strand at 945.184 kb on + strand at 945.185 kb on - strand at 945.185 kb on - strand at 945.185 kb on - strand at 945.242 kb on + strand at 945.242 kb on + strand at 945.242 kb on + strand at 945.242 kb on + strand at 945.242 kb on + strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.299 kb on - strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.595 kb on - strand at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.828 kb on + strand, within A4249_RS04555 at 945.828 kb on + strand, within A4249_RS04555 at 945.828 kb on + strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555
Per-strain Table
Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C) remove 942,731 + A4249_RS04535 0.87 +1.0 942,732 - A4249_RS04535 0.87 -0.4 942,885 - -0.3 942,885 - +0.3 942,907 + -0.2 942,938 + -0.3 943,042 + +0.6 943,042 + -1.5 943,042 + +0.7 943,042 + +1.0 943,042 + -0.7 943,043 - -0.8 943,043 - -1.1 943,044 + -1.8 943,044 + +1.6 943,044 + +0.0 943,044 + -0.1 943,044 + -0.8 943,045 - -0.1 943,112 - A4249_RS04540 0.20 -1.0 943,168 + A4249_RS04540 0.30 -0.1 943,168 + A4249_RS04540 0.30 +1.1 943,201 + A4249_RS04540 0.36 +0.2 943,201 + A4249_RS04540 0.36 -1.4 943,201 + A4249_RS04540 0.36 -0.3 943,201 + A4249_RS04540 0.36 -2.0 943,201 + A4249_RS04540 0.36 +0.2 943,201 + A4249_RS04540 0.36 +1.2 943,201 + A4249_RS04540 0.36 +0.2 943,202 - A4249_RS04540 0.36 +0.0 943,202 - A4249_RS04540 0.36 -1.1 943,202 - A4249_RS04540 0.36 -0.6 943,202 - A4249_RS04540 0.36 +1.3 943,202 - A4249_RS04540 0.36 +0.7 943,276 + A4249_RS04540 0.49 +0.7 943,277 - A4249_RS04540 0.50 -0.8 943,277 - A4249_RS04540 0.50 -0.8 943,277 - A4249_RS04540 0.50 +0.2 943,465 + A4249_RS04540 0.83 +0.6 943,465 + A4249_RS04540 0.83 +0.3 943,465 + A4249_RS04540 0.83 +1.7 943,465 + A4249_RS04540 0.83 -0.6 943,465 + A4249_RS04540 0.83 +1.7 943,465 + A4249_RS04540 0.83 +0.6 943,465 + A4249_RS04540 0.83 +0.3 943,465 + A4249_RS04540 0.83 +0.3 943,466 - A4249_RS04540 0.83 -0.3 943,466 - A4249_RS04540 0.83 +0.0 943,466 - A4249_RS04540 0.83 -0.1 943,466 - A4249_RS04540 0.83 +0.5 943,558 + -0.3 943,558 + -1.7 943,558 + +0.3 943,558 + -0.5 943,559 - -0.1 943,559 - +0.5 943,559 - -0.7 943,559 - +1.1 943,569 - -0.0 943,636 + -0.4 943,636 + -2.0 943,636 + -1.0 943,636 + +0.7 943,637 - +0.4 943,707 + -1.4 943,707 + +0.8 943,707 + +0.5 943,707 + -0.8 943,707 + -0.5 943,708 - +0.3 943,871 + A4249_RS04545 0.11 -0.5 943,871 + A4249_RS04545 0.11 -0.5 943,872 - A4249_RS04545 0.11 +0.7 944,057 + A4249_RS04545 0.22 +2.3 944,057 + A4249_RS04545 0.22 +0.9 944,057 + A4249_RS04545 0.22 -0.3 944,057 + A4249_RS04545 0.22 +0.1 944,057 + A4249_RS04545 0.22 +0.4 944,057 + A4249_RS04545 0.22 -0.1 944,057 + A4249_RS04545 0.22 +0.6 944,058 - A4249_RS04545 0.22 -0.2 944,058 - A4249_RS04545 0.22 -1.5 944,058 - A4249_RS04545 0.22 +0.7 944,058 - A4249_RS04545 0.22 +0.1 944,058 - A4249_RS04545 0.22 -0.3 944,058 - A4249_RS04545 0.22 -1.7 944,058 - A4249_RS04545 0.22 -0.3 944,058 - A4249_RS04545 0.22 -0.1 944,072 + A4249_RS04545 0.23 +0.3 944,072 + A4249_RS04545 0.23 +0.0 944,073 - A4249_RS04545 0.23 -0.5 944,073 - A4249_RS04545 0.23 +0.3 944,073 - A4249_RS04545 0.23 -0.7 944,073 - A4249_RS04545 0.23 -0.1 944,073 - A4249_RS04545 0.23 +0.4 944,073 - A4249_RS04545 0.23 +0.3 944,073 - A4249_RS04545 0.23 +2.3 944,073 - A4249_RS04545 0.23 +0.4 944,073 - A4249_RS04545 0.23 -0.2 944,137 + A4249_RS04545 0.27 +0.4 944,137 + A4249_RS04545 0.27 -0.8 944,138 - A4249_RS04545 0.27 +0.1 944,180 - A4249_RS04545 0.30 -0.6 944,180 - A4249_RS04545 0.30 +0.3 944,390 + A4249_RS04545 0.43 -0.2 944,390 + A4249_RS04545 0.43 -0.0 944,390 + A4249_RS04545 0.43 -0.4 944,390 + A4249_RS04545 0.43 -1.0 944,390 + A4249_RS04545 0.43 -0.3 944,390 + A4249_RS04545 0.43 -1.1 944,390 + A4249_RS04545 0.43 +0.1 944,390 + A4249_RS04545 0.43 -0.2 944,390 + A4249_RS04545 0.43 -0.6 944,391 - A4249_RS04545 0.43 +0.4 944,391 - A4249_RS04545 0.43 +0.1 944,391 - A4249_RS04545 0.43 +1.2 944,391 - A4249_RS04545 0.43 +0.6 944,391 - A4249_RS04545 0.43 -0.5 944,391 - A4249_RS04545 0.43 -0.1 944,391 - A4249_RS04545 0.43 -0.6 944,391 - A4249_RS04545 0.43 +0.7 944,391 - A4249_RS04545 0.43 +0.0 944,391 - A4249_RS04545 0.43 -0.2 944,391 - A4249_RS04545 0.43 +0.7 944,391 - A4249_RS04545 0.43 -0.2 944,391 - A4249_RS04545 0.43 -0.1 944,391 - A4249_RS04545 0.43 -0.9 944,391 - A4249_RS04545 0.43 -1.1 944,391 - A4249_RS04545 0.43 -0.9 944,392 + A4249_RS04545 0.43 -1.3 944,393 - A4249_RS04545 0.43 -1.2 944,489 + A4249_RS04545 0.49 -0.1 944,489 + A4249_RS04545 0.49 +0.7 944,489 + A4249_RS04545 0.49 -0.3 944,489 + A4249_RS04545 0.49 -0.2 944,490 - A4249_RS04545 0.49 +0.3 944,490 - A4249_RS04545 0.49 +0.7 944,490 - A4249_RS04545 0.49 +0.3 944,541 - A4249_RS04545 0.53 -1.5 944,541 - A4249_RS04545 0.53 -0.6 944,711 + A4249_RS04545 0.63 +0.1 944,711 + A4249_RS04545 0.63 +0.9 944,712 - A4249_RS04545 0.63 -0.4 944,732 + A4249_RS04545 0.65 +0.6 944,732 + A4249_RS04545 0.65 -1.2 944,858 + A4249_RS04545 0.73 +0.4 944,859 - A4249_RS04545 0.73 -0.3 944,859 - A4249_RS04545 0.73 -1.4 944,987 + A4249_RS04545 0.81 -0.2 944,987 + A4249_RS04545 0.81 -0.0 944,987 + A4249_RS04545 0.81 +1.0 944,988 - A4249_RS04545 0.81 -1.7 944,988 - A4249_RS04545 0.81 +1.3 944,988 - A4249_RS04545 0.81 -0.5 944,988 - A4249_RS04545 0.81 +0.2 945,182 + -1.2 945,182 + +0.6 945,182 + -0.4 945,182 + -0.5 945,183 - +0.1 945,183 - -0.1 945,183 - +0.1 945,184 + -0.1 945,184 + +0.0 945,184 + +2.0 945,184 + +0.1 945,184 + +0.9 945,185 - +0.6 945,185 - +0.2 945,185 - -0.3 945,242 + -0.0 945,242 + -0.0 945,242 + -1.2 945,242 + +0.4 945,242 + +0.7 945,243 - -0.8 945,243 - -1.2 945,243 - -0.7 945,243 - -0.5 945,243 - +0.4 945,243 - -0.8 945,243 - -1.6 945,243 - +0.5 945,243 - +0.7 945,299 - -0.5 945,555 + +1.1 945,555 + +0.1 945,555 + -0.6 945,555 + +0.4 945,555 + -0.4 945,555 + +0.2 945,555 + +1.3 945,555 + -1.0 945,555 + -0.1 945,556 - +0.8 945,556 - -0.8 945,556 - -0.2 945,556 - -0.6 945,556 - +0.0 945,556 - -1.1 945,595 - -0.0 945,826 + A4249_RS04555 0.29 -1.3 945,826 + A4249_RS04555 0.29 -0.4 945,826 + A4249_RS04555 0.29 -0.3 945,826 + A4249_RS04555 0.29 -1.4 945,826 + A4249_RS04555 0.29 -0.7 945,826 + A4249_RS04555 0.29 -0.2 945,826 + A4249_RS04555 0.29 +1.1 945,826 + A4249_RS04555 0.29 -1.7 945,826 + A4249_RS04555 0.29 -0.7 945,826 + A4249_RS04555 0.29 +0.1 945,827 - A4249_RS04555 0.29 -0.0 945,827 - A4249_RS04555 0.29 -0.2 945,827 - A4249_RS04555 0.29 -1.0 945,827 - A4249_RS04555 0.29 -1.0 945,827 - A4249_RS04555 0.29 -1.5 945,827 - A4249_RS04555 0.29 -0.5 945,827 - A4249_RS04555 0.29 -0.4 945,827 - A4249_RS04555 0.29 +0.1 945,827 - A4249_RS04555 0.29 +0.7 945,828 + A4249_RS04555 0.29 -0.7 945,828 + A4249_RS04555 0.29 +0.0 945,828 + A4249_RS04555 0.29 -0.4 945,829 - A4249_RS04555 0.29 +1.6 945,829 - A4249_RS04555 0.29 -1.6 945,829 - A4249_RS04555 0.29 +0.0 945,829 - A4249_RS04555 0.29 +0.7 945,829 - A4249_RS04555 0.29 -0.2
Or see this region's nucleotide sequence