Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03640

Experiment: Hypoxanthine 0.7347 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS03635 and A4249_RS03640 are separated by 78 nucleotidesA4249_RS03640 and A4249_RS03645 are separated by 136 nucleotides A4249_RS03635: A4249_RS03635 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 767,924 to 769,012 _RS03635 A4249_RS03640: A4249_RS03640 - glutathione S-transferase family protein, at 769,091 to 769,738 _RS03640 A4249_RS03645: A4249_RS03645 - TonB-dependent receptor, at 769,875 to 772,493 _RS03645 Position (kb) 769 770Strain fitness (log2 ratio) -3 -2 -1 0 1at 768.153 kb on + strand, within A4249_RS03635at 768.154 kb on - strand, within A4249_RS03635at 768.154 kb on - strand, within A4249_RS03635at 768.154 kb on - strand, within A4249_RS03635at 768.250 kb on + strand, within A4249_RS03635at 768.250 kb on + strand, within A4249_RS03635at 768.250 kb on + strand, within A4249_RS03635at 768.251 kb on - strand, within A4249_RS03635at 768.251 kb on - strand, within A4249_RS03635at 768.251 kb on - strand, within A4249_RS03635at 768.251 kb on - strand, within A4249_RS03635at 768.311 kb on + strand, within A4249_RS03635at 768.311 kb on + strand, within A4249_RS03635at 768.311 kb on + strand, within A4249_RS03635at 768.311 kb on + strand, within A4249_RS03635at 768.311 kb on + strand, within A4249_RS03635at 768.312 kb on - strand, within A4249_RS03635at 768.312 kb on - strand, within A4249_RS03635at 768.334 kb on + strand, within A4249_RS03635at 768.334 kb on + strand, within A4249_RS03635at 768.334 kb on + strand, within A4249_RS03635at 768.335 kb on - strand, within A4249_RS03635at 768.335 kb on - strand, within A4249_RS03635at 768.335 kb on - strand, within A4249_RS03635at 768.335 kb on - strand, within A4249_RS03635at 768.335 kb on - strand, within A4249_RS03635at 768.335 kb on - strand, within A4249_RS03635at 768.335 kb on - strand, within A4249_RS03635at 768.348 kb on + strand, within A4249_RS03635at 768.349 kb on - strand, within A4249_RS03635at 768.349 kb on - strand, within A4249_RS03635at 768.349 kb on - strand, within A4249_RS03635at 768.447 kb on + strand, within A4249_RS03635at 768.447 kb on + strand, within A4249_RS03635at 768.447 kb on + strand, within A4249_RS03635at 768.447 kb on + strand, within A4249_RS03635at 768.447 kb on + strand, within A4249_RS03635at 768.447 kb on + strand, within A4249_RS03635at 768.447 kb on + strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.448 kb on - strand, within A4249_RS03635at 768.492 kb on + strand, within A4249_RS03635at 768.493 kb on - strand, within A4249_RS03635at 768.493 kb on - strand, within A4249_RS03635at 768.493 kb on - strand, within A4249_RS03635at 768.636 kb on + strand, within A4249_RS03635at 768.636 kb on + strand, within A4249_RS03635at 768.637 kb on - strand, within A4249_RS03635at 768.694 kb on + strand, within A4249_RS03635at 768.694 kb on + strand, within A4249_RS03635at 768.695 kb on - strand, within A4249_RS03635at 768.735 kb on + strand, within A4249_RS03635at 768.736 kb on - strand, within A4249_RS03635at 768.736 kb on - strand, within A4249_RS03635at 768.745 kb on + strand, within A4249_RS03635at 768.745 kb on + strand, within A4249_RS03635at 768.745 kb on + strand, within A4249_RS03635at 768.745 kb on + strand, within A4249_RS03635at 768.745 kb on + strand, within A4249_RS03635at 768.746 kb on - strand, within A4249_RS03635at 768.746 kb on - strand, within A4249_RS03635at 768.746 kb on - strand, within A4249_RS03635at 768.754 kb on - strand, within A4249_RS03635at 768.762 kb on + strand, within A4249_RS03635at 768.762 kb on + strand, within A4249_RS03635at 768.763 kb on - strand, within A4249_RS03635at 768.763 kb on - strand, within A4249_RS03635at 768.763 kb on - strand, within A4249_RS03635at 769.054 kb on - strandat 769.061 kb on + strandat 769.062 kb on - strandat 769.062 kb on - strandat 769.122 kb on + strandat 769.122 kb on + strandat 769.123 kb on - strandat 769.123 kb on - strandat 769.123 kb on - strandat 769.123 kb on - strandat 769.123 kb on - strandat 769.242 kb on + strand, within A4249_RS03640at 769.242 kb on + strand, within A4249_RS03640at 769.242 kb on + strand, within A4249_RS03640at 769.243 kb on - strand, within A4249_RS03640at 769.243 kb on - strand, within A4249_RS03640at 769.243 kb on - strand, within A4249_RS03640at 769.243 kb on - strand, within A4249_RS03640at 769.243 kb on - strand, within A4249_RS03640at 769.335 kb on + strand, within A4249_RS03640at 769.335 kb on + strand, within A4249_RS03640at 769.335 kb on + strand, within A4249_RS03640at 769.335 kb on + strand, within A4249_RS03640at 769.335 kb on + strand, within A4249_RS03640at 769.335 kb on + strand, within A4249_RS03640at 769.335 kb on + strand, within A4249_RS03640at 769.335 kb on + strand, within A4249_RS03640at 769.336 kb on - strand, within A4249_RS03640at 769.440 kb on + strand, within A4249_RS03640at 769.440 kb on + strand, within A4249_RS03640at 769.440 kb on + strand, within A4249_RS03640at 769.440 kb on + strand, within A4249_RS03640at 769.440 kb on + strand, within A4249_RS03640at 769.440 kb on + strand, within A4249_RS03640at 769.440 kb on + strand, within A4249_RS03640at 769.441 kb on - strand, within A4249_RS03640at 769.441 kb on - strand, within A4249_RS03640at 769.441 kb on - strand, within A4249_RS03640at 769.441 kb on - strand, within A4249_RS03640at 769.441 kb on - strand, within A4249_RS03640at 769.441 kb on - strand, within A4249_RS03640at 769.441 kb on - strand, within A4249_RS03640at 769.441 kb on - strand, within A4249_RS03640at 769.441 kb on - strand, within A4249_RS03640at 769.522 kb on - strand, within A4249_RS03640at 769.522 kb on - strand, within A4249_RS03640at 769.532 kb on + strand, within A4249_RS03640at 769.532 kb on + strand, within A4249_RS03640at 769.532 kb on + strand, within A4249_RS03640at 769.532 kb on + strand, within A4249_RS03640at 769.532 kb on + strand, within A4249_RS03640at 769.532 kb on + strand, within A4249_RS03640at 769.533 kb on - strand, within A4249_RS03640at 769.533 kb on - strand, within A4249_RS03640at 769.610 kb on + strand, within A4249_RS03640at 769.680 kb on + strandat 769.680 kb on + strandat 769.680 kb on + strandat 769.680 kb on + strandat 769.680 kb on + strandat 769.680 kb on + strandat 769.681 kb on - strandat 769.681 kb on - strandat 769.681 kb on - strandat 769.729 kb on - strandat 769.729 kb on - strandat 769.729 kb on - strandat 769.763 kb on - strandat 769.763 kb on - strandat 769.763 kb on - strandat 769.782 kb on + strandat 769.783 kb on - strandat 769.783 kb on - strandat 769.783 kb on - strandat 769.783 kb on - strandat 769.786 kb on + strandat 769.786 kb on + strandat 769.786 kb on + strandat 769.787 kb on - strandat 769.787 kb on - strandat 769.787 kb on - strandat 769.787 kb on - strandat 769.815 kb on - strandat 769.815 kb on - strandat 769.843 kb on - strandat 769.843 kb on - strandat 769.843 kb on - strandat 769.843 kb on - strandat 770.334 kb on + strand, within A4249_RS03645at 770.334 kb on + strand, within A4249_RS03645at 770.412 kb on + strand, within A4249_RS03645at 770.413 kb on - strand, within A4249_RS03645at 770.559 kb on + strand, within A4249_RS03645at 770.559 kb on + strand, within A4249_RS03645at 770.592 kb on + strand, within A4249_RS03645at 770.592 kb on + strand, within A4249_RS03645at 770.593 kb on - strand, within A4249_RS03645at 770.593 kb on - strand, within A4249_RS03645at 770.593 kb on - strand, within A4249_RS03645at 770.593 kb on - strand, within A4249_RS03645at 770.610 kb on + strand, within A4249_RS03645at 770.610 kb on + strand, within A4249_RS03645at 770.610 kb on + strand, within A4249_RS03645at 770.611 kb on - strand, within A4249_RS03645

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
remove
768,153 + A4249_RS03635 0.21 +0.1
768,154 - A4249_RS03635 0.21 +1.0
768,154 - A4249_RS03635 0.21 +0.8
768,154 - A4249_RS03635 0.21 -1.0
768,250 + A4249_RS03635 0.30 +0.6
768,250 + A4249_RS03635 0.30 -1.4
768,250 + A4249_RS03635 0.30 -0.4
768,251 - A4249_RS03635 0.30 -0.5
768,251 - A4249_RS03635 0.30 +1.2
768,251 - A4249_RS03635 0.30 +1.3
768,251 - A4249_RS03635 0.30 -0.7
768,311 + A4249_RS03635 0.36 -0.5
768,311 + A4249_RS03635 0.36 +0.3
768,311 + A4249_RS03635 0.36 -1.2
768,311 + A4249_RS03635 0.36 -1.1
768,311 + A4249_RS03635 0.36 -0.3
768,312 - A4249_RS03635 0.36 -1.5
768,312 - A4249_RS03635 0.36 -0.2
768,334 + A4249_RS03635 0.38 -0.6
768,334 + A4249_RS03635 0.38 -1.5
768,334 + A4249_RS03635 0.38 -0.8
768,335 - A4249_RS03635 0.38 +1.1
768,335 - A4249_RS03635 0.38 +0.3
768,335 - A4249_RS03635 0.38 +0.6
768,335 - A4249_RS03635 0.38 +0.4
768,335 - A4249_RS03635 0.38 -1.6
768,335 - A4249_RS03635 0.38 -0.2
768,335 - A4249_RS03635 0.38 -0.6
768,348 + A4249_RS03635 0.39 -0.0
768,349 - A4249_RS03635 0.39 -1.2
768,349 - A4249_RS03635 0.39 +0.5
768,349 - A4249_RS03635 0.39 -1.1
768,447 + A4249_RS03635 0.48 -0.2
768,447 + A4249_RS03635 0.48 -0.1
768,447 + A4249_RS03635 0.48 -0.4
768,447 + A4249_RS03635 0.48 +0.8
768,447 + A4249_RS03635 0.48 -0.7
768,447 + A4249_RS03635 0.48 +0.1
768,447 + A4249_RS03635 0.48 -0.2
768,448 - A4249_RS03635 0.48 -0.2
768,448 - A4249_RS03635 0.48 +0.2
768,448 - A4249_RS03635 0.48 -1.4
768,448 - A4249_RS03635 0.48 -0.3
768,448 - A4249_RS03635 0.48 +0.4
768,448 - A4249_RS03635 0.48 -0.3
768,448 - A4249_RS03635 0.48 +0.9
768,448 - A4249_RS03635 0.48 -0.0
768,448 - A4249_RS03635 0.48 -0.9
768,448 - A4249_RS03635 0.48 -0.2
768,448 - A4249_RS03635 0.48 +1.0
768,448 - A4249_RS03635 0.48 +0.6
768,448 - A4249_RS03635 0.48 +1.0
768,448 - A4249_RS03635 0.48 -2.0
768,492 + A4249_RS03635 0.52 -0.2
768,493 - A4249_RS03635 0.52 -0.1
768,493 - A4249_RS03635 0.52 -0.2
768,493 - A4249_RS03635 0.52 +0.0
768,636 + A4249_RS03635 0.65 +0.7
768,636 + A4249_RS03635 0.65 +0.1
768,637 - A4249_RS03635 0.65 +0.2
768,694 + A4249_RS03635 0.71 -0.5
768,694 + A4249_RS03635 0.71 +0.5
768,695 - A4249_RS03635 0.71 +1.7
768,735 + A4249_RS03635 0.74 +0.5
768,736 - A4249_RS03635 0.75 -0.2
768,736 - A4249_RS03635 0.75 +0.3
768,745 + A4249_RS03635 0.75 +0.5
768,745 + A4249_RS03635 0.75 +0.1
768,745 + A4249_RS03635 0.75 -1.3
768,745 + A4249_RS03635 0.75 +0.1
768,745 + A4249_RS03635 0.75 -0.8
768,746 - A4249_RS03635 0.75 -0.0
768,746 - A4249_RS03635 0.75 -0.1
768,746 - A4249_RS03635 0.75 +0.0
768,754 - A4249_RS03635 0.76 -0.1
768,762 + A4249_RS03635 0.77 -0.0
768,762 + A4249_RS03635 0.77 -1.1
768,763 - A4249_RS03635 0.77 -0.5
768,763 - A4249_RS03635 0.77 -0.1
768,763 - A4249_RS03635 0.77 +1.0
769,054 - -0.8
769,061 + -0.3
769,062 - +0.1
769,062 - +0.0
769,122 + -0.8
769,122 + -1.3
769,123 - -0.3
769,123 - -0.2
769,123 - -0.3
769,123 - +0.5
769,123 - -0.8
769,242 + A4249_RS03640 0.23 +0.4
769,242 + A4249_RS03640 0.23 +0.8
769,242 + A4249_RS03640 0.23 -0.2
769,243 - A4249_RS03640 0.23 -0.6
769,243 - A4249_RS03640 0.23 +0.0
769,243 - A4249_RS03640 0.23 -0.6
769,243 - A4249_RS03640 0.23 +0.6
769,243 - A4249_RS03640 0.23 -0.8
769,335 + A4249_RS03640 0.38 -0.3
769,335 + A4249_RS03640 0.38 -0.4
769,335 + A4249_RS03640 0.38 +0.2
769,335 + A4249_RS03640 0.38 +0.3
769,335 + A4249_RS03640 0.38 -0.4
769,335 + A4249_RS03640 0.38 -0.3
769,335 + A4249_RS03640 0.38 -0.9
769,335 + A4249_RS03640 0.38 -1.4
769,336 - A4249_RS03640 0.38 +0.1
769,440 + A4249_RS03640 0.54 -0.5
769,440 + A4249_RS03640 0.54 -0.5
769,440 + A4249_RS03640 0.54 -0.2
769,440 + A4249_RS03640 0.54 -0.3
769,440 + A4249_RS03640 0.54 -0.3
769,440 + A4249_RS03640 0.54 -0.2
769,440 + A4249_RS03640 0.54 +1.4
769,441 - A4249_RS03640 0.54 -2.8
769,441 - A4249_RS03640 0.54 +0.1
769,441 - A4249_RS03640 0.54 -0.1
769,441 - A4249_RS03640 0.54 -0.5
769,441 - A4249_RS03640 0.54 +0.8
769,441 - A4249_RS03640 0.54 -0.2
769,441 - A4249_RS03640 0.54 -0.3
769,441 - A4249_RS03640 0.54 -0.1
769,441 - A4249_RS03640 0.54 +0.0
769,522 - A4249_RS03640 0.67 -1.3
769,522 - A4249_RS03640 0.67 -1.2
769,532 + A4249_RS03640 0.68 +0.7
769,532 + A4249_RS03640 0.68 +0.4
769,532 + A4249_RS03640 0.68 -0.6
769,532 + A4249_RS03640 0.68 -0.6
769,532 + A4249_RS03640 0.68 +1.2
769,532 + A4249_RS03640 0.68 +0.2
769,533 - A4249_RS03640 0.68 +1.1
769,533 - A4249_RS03640 0.68 +0.6
769,610 + A4249_RS03640 0.80 -0.9
769,680 + -0.5
769,680 + +0.2
769,680 + -2.3
769,680 + -0.4
769,680 + +0.1
769,680 + -0.8
769,681 - -0.0
769,681 - +1.6
769,681 - +0.1
769,729 - +0.9
769,729 - -0.9
769,729 - -1.3
769,763 - +0.2
769,763 - -1.1
769,763 - -0.6
769,782 + +0.9
769,783 - -0.4
769,783 - +0.3
769,783 - -1.0
769,783 - -2.6
769,786 + -0.3
769,786 + -1.3
769,786 + -0.5
769,787 - +1.7
769,787 - -0.2
769,787 - +0.1
769,787 - +0.2
769,815 - -0.8
769,815 - -0.6
769,843 - +0.3
769,843 - -0.1
769,843 - +0.7
769,843 - +0.5
770,334 + A4249_RS03645 0.18 -1.3
770,334 + A4249_RS03645 0.18 +1.6
770,412 + A4249_RS03645 0.21 -0.2
770,413 - A4249_RS03645 0.21 +0.0
770,559 + A4249_RS03645 0.26 -0.8
770,559 + A4249_RS03645 0.26 +1.0
770,592 + A4249_RS03645 0.27 -0.2
770,592 + A4249_RS03645 0.27 +0.0
770,593 - A4249_RS03645 0.27 -0.5
770,593 - A4249_RS03645 0.27 +0.5
770,593 - A4249_RS03645 0.27 +0.4
770,593 - A4249_RS03645 0.27 +0.4
770,610 + A4249_RS03645 0.28 +0.0
770,610 + A4249_RS03645 0.28 -1.0
770,610 + A4249_RS03645 0.28 +0.4
770,611 - A4249_RS03645 0.28 -0.4

Or see this region's nucleotide sequence