Experiment: Hypoxanthine 0.7347 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03105 and A4249_RS03110 are separated by 54 nucleotides A4249_RS03110 and A4249_RS03115 overlap by 4 nucleotides A4249_RS03115 and A4249_RS03120 are separated by 157 nucleotides A4249_RS03120 and A4249_RS03125 overlap by 4 nucleotides
A4249_RS03105: A4249_RS03105 - helix-turn-helix domain-containing protein, at 657,242 to 657,676
_RS03105
A4249_RS03110: A4249_RS03110 - MAPEG family protein, at 657,731 to 658,273
_RS03110
A4249_RS03115: A4249_RS03115 - signal peptidase II, at 658,270 to 658,794
_RS03115
A4249_RS03120: A4249_RS03120 - cation transporter, at 658,952 to 659,602
_RS03120
A4249_RS03125: A4249_RS03125 - class I SAM-dependent methyltransferase, at 659,599 to 660,249
_RS03125
Position (kb) 658
659 Strain fitness (log2 ratio) -1
0
1 at 657.364 kb on + strand, within A4249_RS03105 at 657.364 kb on + strand, within A4249_RS03105 at 657.364 kb on + strand, within A4249_RS03105 at 657.364 kb on + strand, within A4249_RS03105 at 657.364 kb on + strand, within A4249_RS03105 at 657.364 kb on + strand, within A4249_RS03105 at 657.365 kb on - strand, within A4249_RS03105 at 657.365 kb on - strand, within A4249_RS03105 at 657.365 kb on - strand, within A4249_RS03105 at 657.365 kb on - strand, within A4249_RS03105 at 657.365 kb on - strand, within A4249_RS03105 at 657.365 kb on - strand, within A4249_RS03105 at 657.365 kb on - strand, within A4249_RS03105 at 657.365 kb on - strand, within A4249_RS03105 at 657.365 kb on - strand, within A4249_RS03105 at 657.528 kb on + strand, within A4249_RS03105 at 657.528 kb on + strand, within A4249_RS03105 at 657.528 kb on + strand, within A4249_RS03105 at 657.529 kb on - strand, within A4249_RS03105 at 657.529 kb on - strand, within A4249_RS03105 at 657.529 kb on - strand, within A4249_RS03105 at 657.586 kb on - strand, within A4249_RS03105 at 657.586 kb on - strand, within A4249_RS03105 at 657.586 kb on - strand, within A4249_RS03105 at 657.586 kb on - strand, within A4249_RS03105 at 657.586 kb on - strand, within A4249_RS03105 at 657.834 kb on + strand, within A4249_RS03110 at 657.834 kb on + strand, within A4249_RS03110 at 657.835 kb on - strand, within A4249_RS03110 at 657.867 kb on + strand, within A4249_RS03110 at 657.867 kb on + strand, within A4249_RS03110 at 657.868 kb on - strand, within A4249_RS03110 at 658.017 kb on + strand, within A4249_RS03110 at 658.122 kb on + strand, within A4249_RS03110 at 658.185 kb on - strand, within A4249_RS03110 at 658.185 kb on - strand, within A4249_RS03110 at 658.515 kb on + strand, within A4249_RS03115 at 658.515 kb on + strand, within A4249_RS03115 at 658.833 kb on - strand at 658.836 kb on + strand at 658.837 kb on - strand at 658.839 kb on + strand at 658.840 kb on - strand at 658.840 kb on - strand at 659.068 kb on + strand, within A4249_RS03120 at 659.069 kb on - strand, within A4249_RS03120 at 659.171 kb on + strand, within A4249_RS03120 at 659.171 kb on + strand, within A4249_RS03120 at 659.172 kb on - strand, within A4249_RS03120 at 659.172 kb on - strand, within A4249_RS03120 at 659.172 kb on - strand, within A4249_RS03120 at 659.172 kb on - strand, within A4249_RS03120 at 659.172 kb on - strand, within A4249_RS03120 at 659.172 kb on - strand, within A4249_RS03120 at 659.172 kb on - strand, within A4249_RS03120 at 659.172 kb on - strand, within A4249_RS03120 at 659.277 kb on - strand, within A4249_RS03120 at 659.631 kb on + strand at 659.631 kb on + strand at 659.631 kb on + strand at 659.631 kb on + strand at 659.631 kb on + strand at 659.632 kb on - strand at 659.632 kb on - strand at 659.632 kb on - strand at 659.632 kb on - strand at 659.650 kb on + strand at 659.650 kb on + strand at 659.650 kb on + strand at 659.650 kb on + strand at 659.650 kb on + strand at 659.650 kb on + strand at 659.650 kb on + strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C) remove 657,364 + A4249_RS03105 0.28 +0.6 657,364 + A4249_RS03105 0.28 -1.2 657,364 + A4249_RS03105 0.28 +0.2 657,364 + A4249_RS03105 0.28 -0.3 657,364 + A4249_RS03105 0.28 +0.2 657,364 + A4249_RS03105 0.28 -0.6 657,365 - A4249_RS03105 0.28 -1.2 657,365 - A4249_RS03105 0.28 +0.4 657,365 - A4249_RS03105 0.28 -0.1 657,365 - A4249_RS03105 0.28 -0.9 657,365 - A4249_RS03105 0.28 -0.7 657,365 - A4249_RS03105 0.28 -0.8 657,365 - A4249_RS03105 0.28 -0.5 657,365 - A4249_RS03105 0.28 +0.4 657,365 - A4249_RS03105 0.28 -0.5 657,528 + A4249_RS03105 0.66 +0.8 657,528 + A4249_RS03105 0.66 -0.6 657,528 + A4249_RS03105 0.66 -1.3 657,529 - A4249_RS03105 0.66 -0.3 657,529 - A4249_RS03105 0.66 +0.4 657,529 - A4249_RS03105 0.66 -0.4 657,586 - A4249_RS03105 0.79 -0.5 657,586 - A4249_RS03105 0.79 -0.7 657,586 - A4249_RS03105 0.79 -0.0 657,586 - A4249_RS03105 0.79 -0.5 657,586 - A4249_RS03105 0.79 +0.6 657,834 + A4249_RS03110 0.19 -0.0 657,834 + A4249_RS03110 0.19 -0.3 657,835 - A4249_RS03110 0.19 -0.4 657,867 + A4249_RS03110 0.25 -0.5 657,867 + A4249_RS03110 0.25 +0.2 657,868 - A4249_RS03110 0.25 -1.1 658,017 + A4249_RS03110 0.53 -0.6 658,122 + A4249_RS03110 0.72 -1.3 658,185 - A4249_RS03110 0.84 +0.1 658,185 - A4249_RS03110 0.84 +0.0 658,515 + A4249_RS03115 0.47 -0.3 658,515 + A4249_RS03115 0.47 -0.3 658,833 - -0.8 658,836 + +0.8 658,837 - +0.7 658,839 + -0.4 658,840 - +0.3 658,840 - +0.6 659,068 + A4249_RS03120 0.18 +0.9 659,069 - A4249_RS03120 0.18 -0.4 659,171 + A4249_RS03120 0.34 +0.1 659,171 + A4249_RS03120 0.34 -0.3 659,172 - A4249_RS03120 0.34 -0.3 659,172 - A4249_RS03120 0.34 +0.3 659,172 - A4249_RS03120 0.34 -0.5 659,172 - A4249_RS03120 0.34 -0.8 659,172 - A4249_RS03120 0.34 -0.2 659,172 - A4249_RS03120 0.34 -0.6 659,172 - A4249_RS03120 0.34 -0.9 659,172 - A4249_RS03120 0.34 +0.0 659,277 - A4249_RS03120 0.50 -0.4 659,631 + -0.1 659,631 + -0.7 659,631 + +1.0 659,631 + -0.2 659,631 + -0.3 659,632 - -0.3 659,632 - +0.2 659,632 - -0.5 659,632 - +0.3 659,650 + +0.3 659,650 + +0.2 659,650 + -0.8 659,650 + +0.0 659,650 + -0.5 659,650 + -0.6 659,650 + -0.2 659,651 - +0.1 659,651 - -0.7 659,651 - -0.6 659,651 - +0.2 659,651 - +0.2
Or see this region's nucleotide sequence