Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02590

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02585 and A4249_RS02590 are separated by 3 nucleotidesA4249_RS02590 and A4249_RS02595 are separated by 156 nucleotides A4249_RS02585: A4249_RS02585 - M28 family peptidase, at 553,234 to 554,874 _RS02585 A4249_RS02590: A4249_RS02590 - helix-turn-helix transcriptional regulator, at 554,878 to 556,308 _RS02590 A4249_RS02595: A4249_RS02595 - isocitrate lyase, at 556,465 to 557,745 _RS02595 Position (kb) 554 555 556 557Strain fitness (log2 ratio) -1 0 1 2at 554.155 kb on + strand, within A4249_RS02585at 554.155 kb on + strand, within A4249_RS02585at 554.155 kb on + strand, within A4249_RS02585at 554.155 kb on + strand, within A4249_RS02585at 554.156 kb on - strand, within A4249_RS02585at 554.156 kb on - strand, within A4249_RS02585at 554.156 kb on - strand, within A4249_RS02585at 554.156 kb on - strand, within A4249_RS02585at 554.156 kb on - strand, within A4249_RS02585at 554.156 kb on - strand, within A4249_RS02585at 554.156 kb on - strand, within A4249_RS02585at 554.156 kb on - strand, within A4249_RS02585at 554.164 kb on + strand, within A4249_RS02585at 554.164 kb on + strand, within A4249_RS02585at 554.164 kb on + strand, within A4249_RS02585at 554.165 kb on - strand, within A4249_RS02585at 554.165 kb on - strand, within A4249_RS02585at 554.372 kb on - strand, within A4249_RS02585at 554.389 kb on + strand, within A4249_RS02585at 554.390 kb on - strand, within A4249_RS02585at 554.439 kb on + strand, within A4249_RS02585at 554.439 kb on + strand, within A4249_RS02585at 554.440 kb on - strand, within A4249_RS02585at 554.497 kb on - strand, within A4249_RS02585at 554.519 kb on + strand, within A4249_RS02585at 554.519 kb on + strand, within A4249_RS02585at 554.520 kb on - strand, within A4249_RS02585at 554.548 kb on + strand, within A4249_RS02585at 554.566 kb on + strand, within A4249_RS02585at 554.566 kb on + strand, within A4249_RS02585at 554.566 kb on + strand, within A4249_RS02585at 554.566 kb on + strand, within A4249_RS02585at 554.566 kb on + strand, within A4249_RS02585at 554.566 kb on + strand, within A4249_RS02585at 554.567 kb on - strand, within A4249_RS02585at 554.567 kb on - strand, within A4249_RS02585at 554.567 kb on - strand, within A4249_RS02585at 554.567 kb on - strand, within A4249_RS02585at 554.567 kb on - strand, within A4249_RS02585at 554.567 kb on - strand, within A4249_RS02585at 554.567 kb on - strand, within A4249_RS02585at 554.567 kb on - strand, within A4249_RS02585at 554.570 kb on - strand, within A4249_RS02585at 554.671 kb on + strand, within A4249_RS02585at 554.672 kb on - strand, within A4249_RS02585at 554.674 kb on + strand, within A4249_RS02585at 554.674 kb on + strand, within A4249_RS02585at 554.674 kb on + strand, within A4249_RS02585at 554.674 kb on + strand, within A4249_RS02585at 554.675 kb on - strand, within A4249_RS02585at 554.675 kb on - strand, within A4249_RS02585at 554.675 kb on - strand, within A4249_RS02585at 554.675 kb on - strand, within A4249_RS02585at 554.675 kb on - strand, within A4249_RS02585at 554.695 kb on + strand, within A4249_RS02585at 554.695 kb on + strand, within A4249_RS02585at 554.695 kb on + strand, within A4249_RS02585at 554.695 kb on + strand, within A4249_RS02585at 554.695 kb on + strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.696 kb on - strand, within A4249_RS02585at 554.698 kb on + strand, within A4249_RS02585at 554.699 kb on - strand, within A4249_RS02585at 554.699 kb on - strand, within A4249_RS02585at 554.731 kb on + strandat 554.732 kb on - strandat 554.770 kb on + strandat 554.770 kb on + strandat 554.770 kb on + strandat 554.771 kb on - strandat 554.771 kb on - strandat 555.047 kb on + strand, within A4249_RS02590at 555.047 kb on + strand, within A4249_RS02590at 555.047 kb on + strand, within A4249_RS02590at 555.047 kb on + strand, within A4249_RS02590at 555.113 kb on + strand, within A4249_RS02590at 555.114 kb on - strand, within A4249_RS02590at 555.114 kb on - strand, within A4249_RS02590at 555.285 kb on - strand, within A4249_RS02590at 555.285 kb on - strand, within A4249_RS02590at 555.389 kb on + strand, within A4249_RS02590at 555.389 kb on + strand, within A4249_RS02590at 555.389 kb on + strand, within A4249_RS02590at 555.390 kb on - strand, within A4249_RS02590at 555.390 kb on - strand, within A4249_RS02590at 555.390 kb on - strand, within A4249_RS02590at 555.390 kb on - strand, within A4249_RS02590at 555.429 kb on - strand, within A4249_RS02590at 555.429 kb on - strand, within A4249_RS02590at 555.599 kb on + strand, within A4249_RS02590at 555.599 kb on + strand, within A4249_RS02590at 555.600 kb on - strand, within A4249_RS02590at 555.671 kb on + strand, within A4249_RS02590at 555.671 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.863 kb on + strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.864 kb on - strand, within A4249_RS02590at 555.959 kb on + strand, within A4249_RS02590at 555.960 kb on - strand, within A4249_RS02590at 555.960 kb on - strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.124 kb on + strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.125 kb on - strand, within A4249_RS02590at 556.180 kb on + strandat 556.528 kb on + strandat 556.528 kb on + strandat 556.529 kb on - strandat 556.578 kb on + strandat 556.635 kb on + strand, within A4249_RS02595at 556.636 kb on - strand, within A4249_RS02595at 556.636 kb on - strand, within A4249_RS02595at 556.671 kb on + strand, within A4249_RS02595at 556.672 kb on - strand, within A4249_RS02595at 556.672 kb on - strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.705 kb on + strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.706 kb on - strand, within A4249_RS02595at 556.740 kb on + strand, within A4249_RS02595at 556.741 kb on - strand, within A4249_RS02595at 556.741 kb on - strand, within A4249_RS02595at 556.774 kb on + strand, within A4249_RS02595at 557.241 kb on - strand, within A4249_RS02595at 557.269 kb on + strand, within A4249_RS02595at 557.269 kb on + strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.270 kb on - strand, within A4249_RS02595at 557.277 kb on + strand, within A4249_RS02595

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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554,155 + A4249_RS02585 0.56 +2.1
554,155 + A4249_RS02585 0.56 +0.6
554,155 + A4249_RS02585 0.56 -0.1
554,155 + A4249_RS02585 0.56 +0.2
554,156 - A4249_RS02585 0.56 -0.6
554,156 - A4249_RS02585 0.56 -0.6
554,156 - A4249_RS02585 0.56 +0.8
554,156 - A4249_RS02585 0.56 -0.6
554,156 - A4249_RS02585 0.56 -0.6
554,156 - A4249_RS02585 0.56 -0.8
554,156 - A4249_RS02585 0.56 +1.5
554,156 - A4249_RS02585 0.56 -0.3
554,164 + A4249_RS02585 0.57 -0.7
554,164 + A4249_RS02585 0.57 -0.1
554,164 + A4249_RS02585 0.57 -0.2
554,165 - A4249_RS02585 0.57 +0.6
554,165 - A4249_RS02585 0.57 -0.1
554,372 - A4249_RS02585 0.69 +0.1
554,389 + A4249_RS02585 0.70 -0.8
554,390 - A4249_RS02585 0.70 -1.0
554,439 + A4249_RS02585 0.73 -1.2
554,439 + A4249_RS02585 0.73 -0.5
554,440 - A4249_RS02585 0.73 +0.1
554,497 - A4249_RS02585 0.77 -1.6
554,519 + A4249_RS02585 0.78 -0.1
554,519 + A4249_RS02585 0.78 -0.7
554,520 - A4249_RS02585 0.78 +0.5
554,548 + A4249_RS02585 0.80 -1.1
554,566 + A4249_RS02585 0.81 +0.4
554,566 + A4249_RS02585 0.81 +0.2
554,566 + A4249_RS02585 0.81 -0.2
554,566 + A4249_RS02585 0.81 +0.2
554,566 + A4249_RS02585 0.81 -0.4
554,566 + A4249_RS02585 0.81 +0.4
554,567 - A4249_RS02585 0.81 +0.5
554,567 - A4249_RS02585 0.81 -1.2
554,567 - A4249_RS02585 0.81 +0.3
554,567 - A4249_RS02585 0.81 +1.4
554,567 - A4249_RS02585 0.81 -0.6
554,567 - A4249_RS02585 0.81 +0.1
554,567 - A4249_RS02585 0.81 -1.4
554,567 - A4249_RS02585 0.81 +1.2
554,570 - A4249_RS02585 0.81 -1.2
554,671 + A4249_RS02585 0.88 -0.3
554,672 - A4249_RS02585 0.88 -0.7
554,674 + A4249_RS02585 0.88 +1.2
554,674 + A4249_RS02585 0.88 -0.4
554,674 + A4249_RS02585 0.88 +0.3
554,674 + A4249_RS02585 0.88 +0.2
554,675 - A4249_RS02585 0.88 -0.7
554,675 - A4249_RS02585 0.88 -0.3
554,675 - A4249_RS02585 0.88 +2.1
554,675 - A4249_RS02585 0.88 +0.6
554,675 - A4249_RS02585 0.88 +0.3
554,695 + A4249_RS02585 0.89 -1.7
554,695 + A4249_RS02585 0.89 -0.6
554,695 + A4249_RS02585 0.89 -0.2
554,695 + A4249_RS02585 0.89 -0.2
554,695 + A4249_RS02585 0.89 -0.8
554,696 - A4249_RS02585 0.89 -0.5
554,696 - A4249_RS02585 0.89 +1.0
554,696 - A4249_RS02585 0.89 +0.5
554,696 - A4249_RS02585 0.89 -0.4
554,696 - A4249_RS02585 0.89 -0.4
554,696 - A4249_RS02585 0.89 +2.4
554,696 - A4249_RS02585 0.89 +1.2
554,696 - A4249_RS02585 0.89 -0.8
554,696 - A4249_RS02585 0.89 -1.3
554,696 - A4249_RS02585 0.89 -0.9
554,696 - A4249_RS02585 0.89 +0.5
554,698 + A4249_RS02585 0.89 -0.3
554,699 - A4249_RS02585 0.89 -0.4
554,699 - A4249_RS02585 0.89 +1.1
554,731 + -1.6
554,732 - -0.2
554,770 + +1.6
554,770 + -0.1
554,770 + -1.1
554,771 - -1.0
554,771 - -0.4
555,047 + A4249_RS02590 0.12 +0.3
555,047 + A4249_RS02590 0.12 +0.8
555,047 + A4249_RS02590 0.12 +0.6
555,047 + A4249_RS02590 0.12 -0.6
555,113 + A4249_RS02590 0.16 +0.6
555,114 - A4249_RS02590 0.16 +0.6
555,114 - A4249_RS02590 0.16 +0.0
555,285 - A4249_RS02590 0.28 +0.4
555,285 - A4249_RS02590 0.28 +1.1
555,389 + A4249_RS02590 0.36 +0.6
555,389 + A4249_RS02590 0.36 -0.5
555,389 + A4249_RS02590 0.36 +0.1
555,390 - A4249_RS02590 0.36 +0.5
555,390 - A4249_RS02590 0.36 -0.0
555,390 - A4249_RS02590 0.36 +0.4
555,390 - A4249_RS02590 0.36 +1.3
555,429 - A4249_RS02590 0.39 -0.3
555,429 - A4249_RS02590 0.39 +0.5
555,599 + A4249_RS02590 0.50 +0.4
555,599 + A4249_RS02590 0.50 -0.3
555,600 - A4249_RS02590 0.50 -0.1
555,671 + A4249_RS02590 0.55 -0.0
555,671 + A4249_RS02590 0.55 +2.0
555,863 + A4249_RS02590 0.69 +1.2
555,863 + A4249_RS02590 0.69 +0.7
555,863 + A4249_RS02590 0.69 +0.8
555,863 + A4249_RS02590 0.69 +0.5
555,863 + A4249_RS02590 0.69 -0.2
555,863 + A4249_RS02590 0.69 +0.4
555,863 + A4249_RS02590 0.69 -0.3
555,864 - A4249_RS02590 0.69 -1.0
555,864 - A4249_RS02590 0.69 +1.1
555,864 - A4249_RS02590 0.69 -0.2
555,864 - A4249_RS02590 0.69 +0.3
555,864 - A4249_RS02590 0.69 +0.7
555,864 - A4249_RS02590 0.69 +0.6
555,959 + A4249_RS02590 0.76 +1.0
555,960 - A4249_RS02590 0.76 +0.2
555,960 - A4249_RS02590 0.76 -0.5
556,124 + A4249_RS02590 0.87 +0.3
556,124 + A4249_RS02590 0.87 +1.1
556,124 + A4249_RS02590 0.87 +0.9
556,124 + A4249_RS02590 0.87 +1.3
556,124 + A4249_RS02590 0.87 +1.3
556,124 + A4249_RS02590 0.87 +0.6
556,124 + A4249_RS02590 0.87 +1.1
556,124 + A4249_RS02590 0.87 +0.6
556,124 + A4249_RS02590 0.87 +0.5
556,124 + A4249_RS02590 0.87 +0.1
556,125 - A4249_RS02590 0.87 +0.8
556,125 - A4249_RS02590 0.87 +0.5
556,125 - A4249_RS02590 0.87 +2.4
556,125 - A4249_RS02590 0.87 -0.1
556,125 - A4249_RS02590 0.87 +1.0
556,125 - A4249_RS02590 0.87 +0.9
556,125 - A4249_RS02590 0.87 +1.3
556,125 - A4249_RS02590 0.87 +0.2
556,125 - A4249_RS02590 0.87 +0.2
556,125 - A4249_RS02590 0.87 +0.4
556,125 - A4249_RS02590 0.87 +0.5
556,125 - A4249_RS02590 0.87 +1.2
556,125 - A4249_RS02590 0.87 -0.1
556,180 + +0.1
556,528 + -0.1
556,528 + -0.7
556,529 - +1.1
556,578 + +0.2
556,635 + A4249_RS02595 0.13 +0.9
556,636 - A4249_RS02595 0.13 -0.5
556,636 - A4249_RS02595 0.13 -0.5
556,671 + A4249_RS02595 0.16 +0.7
556,672 - A4249_RS02595 0.16 +0.2
556,672 - A4249_RS02595 0.16 +0.3
556,705 + A4249_RS02595 0.19 +0.4
556,705 + A4249_RS02595 0.19 +1.1
556,705 + A4249_RS02595 0.19 +1.0
556,705 + A4249_RS02595 0.19 +0.8
556,705 + A4249_RS02595 0.19 +1.3
556,705 + A4249_RS02595 0.19 -0.0
556,705 + A4249_RS02595 0.19 -1.1
556,705 + A4249_RS02595 0.19 -0.2
556,705 + A4249_RS02595 0.19 +0.6
556,705 + A4249_RS02595 0.19 +0.6
556,706 - A4249_RS02595 0.19 +0.6
556,706 - A4249_RS02595 0.19 +1.1
556,706 - A4249_RS02595 0.19 -0.8
556,706 - A4249_RS02595 0.19 +1.3
556,706 - A4249_RS02595 0.19 +1.6
556,706 - A4249_RS02595 0.19 +0.3
556,706 - A4249_RS02595 0.19 +0.6
556,706 - A4249_RS02595 0.19 +0.2
556,706 - A4249_RS02595 0.19 +0.6
556,706 - A4249_RS02595 0.19 -0.0
556,706 - A4249_RS02595 0.19 -0.2
556,740 + A4249_RS02595 0.21 -0.1
556,741 - A4249_RS02595 0.22 +1.1
556,741 - A4249_RS02595 0.22 -0.1
556,774 + A4249_RS02595 0.24 +0.5
557,241 - A4249_RS02595 0.61 -0.9
557,269 + A4249_RS02595 0.63 -0.7
557,269 + A4249_RS02595 0.63 -0.9
557,270 - A4249_RS02595 0.63 +0.2
557,270 - A4249_RS02595 0.63 +1.6
557,270 - A4249_RS02595 0.63 -0.9
557,270 - A4249_RS02595 0.63 +0.7
557,277 + A4249_RS02595 0.63 +0.5

Or see this region's nucleotide sequence