Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01290

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01280 and A4249_RS01285 are separated by 95 nucleotidesA4249_RS01285 and A4249_RS01290 are separated by 56 nucleotidesA4249_RS01290 and A4249_RS01295 are separated by 9 nucleotides A4249_RS01280: A4249_RS01280 - major capsid protein, at 243,691 to 244,770 _RS01280 A4249_RS01285: A4249_RS01285 - head decoration protein, at 244,866 to 245,264 _RS01285 A4249_RS01290: A4249_RS01290 - S49 family peptidase, at 245,321 to 246,883 _RS01290 A4249_RS01295: A4249_RS01295 - phage portal protein, at 246,893 to 248,575 _RS01295 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1 2at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.589 kb on + strand, within A4249_RS01280at 244.622 kb on + strand, within A4249_RS01280at 244.622 kb on + strand, within A4249_RS01280at 244.622 kb on + strand, within A4249_RS01280at 244.623 kb on - strand, within A4249_RS01280at 244.623 kb on - strand, within A4249_RS01280at 244.623 kb on - strand, within A4249_RS01280at 244.996 kb on + strand, within A4249_RS01285at 244.996 kb on + strand, within A4249_RS01285at 244.996 kb on + strand, within A4249_RS01285at 244.996 kb on + strand, within A4249_RS01285at 244.997 kb on - strand, within A4249_RS01285at 244.997 kb on - strand, within A4249_RS01285at 244.997 kb on - strand, within A4249_RS01285at 244.997 kb on - strand, within A4249_RS01285at 245.054 kb on - strand, within A4249_RS01285at 245.385 kb on - strandat 245.440 kb on + strandat 245.441 kb on - strandat 245.441 kb on - strandat 245.441 kb on - strandat 245.891 kb on + strand, within A4249_RS01290at 245.891 kb on + strand, within A4249_RS01290at 245.891 kb on + strand, within A4249_RS01290at 245.891 kb on + strand, within A4249_RS01290at 245.891 kb on + strand, within A4249_RS01290at 245.892 kb on - strand, within A4249_RS01290at 246.255 kb on + strand, within A4249_RS01290at 246.255 kb on + strand, within A4249_RS01290at 246.255 kb on + strand, within A4249_RS01290at 246.256 kb on - strand, within A4249_RS01290at 246.256 kb on - strand, within A4249_RS01290at 246.256 kb on - strand, within A4249_RS01290at 246.256 kb on - strand, within A4249_RS01290at 246.330 kb on + strand, within A4249_RS01290at 246.331 kb on - strand, within A4249_RS01290at 246.407 kb on + strand, within A4249_RS01290at 246.408 kb on - strand, within A4249_RS01290at 246.410 kb on + strand, within A4249_RS01290at 246.410 kb on + strand, within A4249_RS01290at 246.410 kb on + strand, within A4249_RS01290at 246.411 kb on - strand, within A4249_RS01290at 246.498 kb on + strand, within A4249_RS01290at 246.498 kb on + strand, within A4249_RS01290at 246.498 kb on + strand, within A4249_RS01290at 246.499 kb on - strand, within A4249_RS01290at 246.499 kb on - strand, within A4249_RS01290at 246.499 kb on - strand, within A4249_RS01290at 246.499 kb on - strand, within A4249_RS01290at 246.499 kb on - strand, within A4249_RS01290at 246.580 kb on + strand, within A4249_RS01290at 246.633 kb on + strand, within A4249_RS01290at 246.633 kb on + strand, within A4249_RS01290at 246.634 kb on - strand, within A4249_RS01290at 246.634 kb on - strand, within A4249_RS01290at 246.634 kb on - strand, within A4249_RS01290at 246.634 kb on - strand, within A4249_RS01290at 246.675 kb on + strand, within A4249_RS01290at 246.675 kb on + strand, within A4249_RS01290at 246.676 kb on - strand, within A4249_RS01290at 246.830 kb on - strandat 247.114 kb on + strand, within A4249_RS01295at 247.114 kb on + strand, within A4249_RS01295at 247.114 kb on + strand, within A4249_RS01295at 247.203 kb on + strand, within A4249_RS01295at 247.204 kb on - strand, within A4249_RS01295at 247.204 kb on - strand, within A4249_RS01295at 247.239 kb on + strand, within A4249_RS01295at 247.239 kb on + strand, within A4249_RS01295at 247.239 kb on + strand, within A4249_RS01295at 247.240 kb on - strand, within A4249_RS01295at 247.240 kb on - strand, within A4249_RS01295at 247.240 kb on - strand, within A4249_RS01295at 247.240 kb on - strand, within A4249_RS01295at 247.257 kb on + strand, within A4249_RS01295at 247.291 kb on - strand, within A4249_RS01295at 247.291 kb on - strand, within A4249_RS01295at 247.326 kb on + strand, within A4249_RS01295at 247.326 kb on + strand, within A4249_RS01295at 247.326 kb on + strand, within A4249_RS01295at 247.326 kb on + strand, within A4249_RS01295at 247.326 kb on + strand, within A4249_RS01295at 247.326 kb on + strand, within A4249_RS01295at 247.326 kb on + strand, within A4249_RS01295at 247.326 kb on + strand, within A4249_RS01295at 247.327 kb on - strand, within A4249_RS01295at 247.327 kb on - strand, within A4249_RS01295at 247.327 kb on - strand, within A4249_RS01295at 247.327 kb on - strand, within A4249_RS01295at 247.329 kb on + strand, within A4249_RS01295at 247.329 kb on + strand, within A4249_RS01295at 247.329 kb on + strand, within A4249_RS01295at 247.329 kb on + strand, within A4249_RS01295at 247.330 kb on - strand, within A4249_RS01295at 247.330 kb on - strand, within A4249_RS01295at 247.330 kb on - strand, within A4249_RS01295at 247.330 kb on - strand, within A4249_RS01295at 247.416 kb on + strand, within A4249_RS01295at 247.416 kb on + strand, within A4249_RS01295at 247.416 kb on + strand, within A4249_RS01295at 247.416 kb on + strand, within A4249_RS01295at 247.416 kb on + strand, within A4249_RS01295at 247.417 kb on - strand, within A4249_RS01295at 247.417 kb on - strand, within A4249_RS01295at 247.417 kb on - strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.431 kb on + strand, within A4249_RS01295at 247.432 kb on - strand, within A4249_RS01295at 247.432 kb on - strand, within A4249_RS01295at 247.432 kb on - strand, within A4249_RS01295at 247.432 kb on - strand, within A4249_RS01295at 247.432 kb on - strand, within A4249_RS01295at 247.452 kb on + strand, within A4249_RS01295at 247.452 kb on + strand, within A4249_RS01295at 247.452 kb on + strand, within A4249_RS01295at 247.452 kb on + strand, within A4249_RS01295at 247.452 kb on + strand, within A4249_RS01295at 247.452 kb on + strand, within A4249_RS01295at 247.452 kb on + strand, within A4249_RS01295at 247.452 kb on + strand, within A4249_RS01295at 247.453 kb on - strand, within A4249_RS01295at 247.453 kb on - strand, within A4249_RS01295at 247.453 kb on - strand, within A4249_RS01295at 247.453 kb on - strand, within A4249_RS01295at 247.453 kb on - strand, within A4249_RS01295at 247.453 kb on - strand, within A4249_RS01295at 247.453 kb on - strand, within A4249_RS01295at 247.486 kb on + strand, within A4249_RS01295at 247.487 kb on - strand, within A4249_RS01295at 247.487 kb on - strand, within A4249_RS01295at 247.487 kb on - strand, within A4249_RS01295at 247.487 kb on - strand, within A4249_RS01295at 247.610 kb on + strand, within A4249_RS01295at 247.611 kb on + strand, within A4249_RS01295at 247.611 kb on + strand, within A4249_RS01295at 247.611 kb on + strand, within A4249_RS01295at 247.611 kb on + strand, within A4249_RS01295at 247.611 kb on + strand, within A4249_RS01295at 247.612 kb on - strand, within A4249_RS01295at 247.612 kb on - strand, within A4249_RS01295at 247.612 kb on - strand, within A4249_RS01295at 247.612 kb on - strand, within A4249_RS01295at 247.612 kb on - strand, within A4249_RS01295at 247.612 kb on - strand, within A4249_RS01295at 247.612 kb on - strand, within A4249_RS01295at 247.662 kb on + strand, within A4249_RS01295at 247.663 kb on - strand, within A4249_RS01295at 247.663 kb on - strand, within A4249_RS01295

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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244,589 + A4249_RS01280 0.83 -0.4
244,589 + A4249_RS01280 0.83 -0.3
244,589 + A4249_RS01280 0.83 -0.5
244,589 + A4249_RS01280 0.83 +1.1
244,589 + A4249_RS01280 0.83 +0.5
244,589 + A4249_RS01280 0.83 -0.4
244,622 + A4249_RS01280 0.86 -0.9
244,622 + A4249_RS01280 0.86 -0.6
244,622 + A4249_RS01280 0.86 -1.7
244,623 - A4249_RS01280 0.86 -0.0
244,623 - A4249_RS01280 0.86 -0.1
244,623 - A4249_RS01280 0.86 +0.5
244,996 + A4249_RS01285 0.33 -0.3
244,996 + A4249_RS01285 0.33 +1.0
244,996 + A4249_RS01285 0.33 -1.4
244,996 + A4249_RS01285 0.33 -0.6
244,997 - A4249_RS01285 0.33 -0.3
244,997 - A4249_RS01285 0.33 +0.0
244,997 - A4249_RS01285 0.33 -0.4
244,997 - A4249_RS01285 0.33 -0.6
245,054 - A4249_RS01285 0.47 -0.7
245,385 - +0.1
245,440 + -0.3
245,441 - +0.8
245,441 - +1.8
245,441 - -1.9
245,891 + A4249_RS01290 0.36 +0.5
245,891 + A4249_RS01290 0.36 -0.5
245,891 + A4249_RS01290 0.36 +0.6
245,891 + A4249_RS01290 0.36 -0.6
245,891 + A4249_RS01290 0.36 -0.5
245,892 - A4249_RS01290 0.37 -0.5
246,255 + A4249_RS01290 0.60 +0.2
246,255 + A4249_RS01290 0.60 -1.0
246,255 + A4249_RS01290 0.60 -0.8
246,256 - A4249_RS01290 0.60 -1.4
246,256 - A4249_RS01290 0.60 -0.4
246,256 - A4249_RS01290 0.60 +0.2
246,256 - A4249_RS01290 0.60 +0.5
246,330 + A4249_RS01290 0.65 -2.2
246,331 - A4249_RS01290 0.65 -0.2
246,407 + A4249_RS01290 0.69 -0.2
246,408 - A4249_RS01290 0.70 -1.4
246,410 + A4249_RS01290 0.70 -1.0
246,410 + A4249_RS01290 0.70 -0.9
246,410 + A4249_RS01290 0.70 +0.0
246,411 - A4249_RS01290 0.70 -1.0
246,498 + A4249_RS01290 0.75 -0.2
246,498 + A4249_RS01290 0.75 -0.9
246,498 + A4249_RS01290 0.75 +0.2
246,499 - A4249_RS01290 0.75 -0.2
246,499 - A4249_RS01290 0.75 -2.6
246,499 - A4249_RS01290 0.75 -0.8
246,499 - A4249_RS01290 0.75 +0.4
246,499 - A4249_RS01290 0.75 -0.8
246,580 + A4249_RS01290 0.81 -0.6
246,633 + A4249_RS01290 0.84 +0.2
246,633 + A4249_RS01290 0.84 -0.2
246,634 - A4249_RS01290 0.84 +0.7
246,634 - A4249_RS01290 0.84 -0.9
246,634 - A4249_RS01290 0.84 -1.1
246,634 - A4249_RS01290 0.84 +0.3
246,675 + A4249_RS01290 0.87 +0.2
246,675 + A4249_RS01290 0.87 -0.4
246,676 - A4249_RS01290 0.87 -0.5
246,830 - -1.2
247,114 + A4249_RS01295 0.13 +1.1
247,114 + A4249_RS01295 0.13 +1.1
247,114 + A4249_RS01295 0.13 -0.2
247,203 + A4249_RS01295 0.18 +0.7
247,204 - A4249_RS01295 0.18 -0.3
247,204 - A4249_RS01295 0.18 -0.3
247,239 + A4249_RS01295 0.21 +0.2
247,239 + A4249_RS01295 0.21 -0.6
247,239 + A4249_RS01295 0.21 +1.2
247,240 - A4249_RS01295 0.21 -1.7
247,240 - A4249_RS01295 0.21 -0.2
247,240 - A4249_RS01295 0.21 -1.5
247,240 - A4249_RS01295 0.21 -0.9
247,257 + A4249_RS01295 0.22 -0.5
247,291 - A4249_RS01295 0.24 -0.7
247,291 - A4249_RS01295 0.24 +1.4
247,326 + A4249_RS01295 0.26 +0.4
247,326 + A4249_RS01295 0.26 +0.9
247,326 + A4249_RS01295 0.26 -1.5
247,326 + A4249_RS01295 0.26 +0.3
247,326 + A4249_RS01295 0.26 -0.6
247,326 + A4249_RS01295 0.26 -1.2
247,326 + A4249_RS01295 0.26 -0.7
247,326 + A4249_RS01295 0.26 -0.8
247,327 - A4249_RS01295 0.26 -0.6
247,327 - A4249_RS01295 0.26 -0.3
247,327 - A4249_RS01295 0.26 -0.5
247,327 - A4249_RS01295 0.26 +0.4
247,329 + A4249_RS01295 0.26 +0.6
247,329 + A4249_RS01295 0.26 +0.9
247,329 + A4249_RS01295 0.26 +1.3
247,329 + A4249_RS01295 0.26 +1.6
247,330 - A4249_RS01295 0.26 +0.5
247,330 - A4249_RS01295 0.26 -0.1
247,330 - A4249_RS01295 0.26 -1.8
247,330 - A4249_RS01295 0.26 -0.1
247,416 + A4249_RS01295 0.31 -0.2
247,416 + A4249_RS01295 0.31 -0.3
247,416 + A4249_RS01295 0.31 -1.2
247,416 + A4249_RS01295 0.31 -1.3
247,416 + A4249_RS01295 0.31 +1.1
247,417 - A4249_RS01295 0.31 +0.4
247,417 - A4249_RS01295 0.31 -0.2
247,417 - A4249_RS01295 0.31 -0.5
247,431 + A4249_RS01295 0.32 +0.2
247,431 + A4249_RS01295 0.32 -0.7
247,431 + A4249_RS01295 0.32 -0.5
247,431 + A4249_RS01295 0.32 +1.1
247,431 + A4249_RS01295 0.32 +0.2
247,431 + A4249_RS01295 0.32 -1.5
247,431 + A4249_RS01295 0.32 -0.1
247,431 + A4249_RS01295 0.32 -0.1
247,431 + A4249_RS01295 0.32 +0.8
247,431 + A4249_RS01295 0.32 -0.1
247,431 + A4249_RS01295 0.32 -0.1
247,431 + A4249_RS01295 0.32 -0.7
247,431 + A4249_RS01295 0.32 -0.4
247,432 - A4249_RS01295 0.32 +0.0
247,432 - A4249_RS01295 0.32 +0.4
247,432 - A4249_RS01295 0.32 +0.3
247,432 - A4249_RS01295 0.32 -0.4
247,432 - A4249_RS01295 0.32 +0.8
247,452 + A4249_RS01295 0.33 -0.2
247,452 + A4249_RS01295 0.33 +0.8
247,452 + A4249_RS01295 0.33 -2.7
247,452 + A4249_RS01295 0.33 -1.3
247,452 + A4249_RS01295 0.33 +0.5
247,452 + A4249_RS01295 0.33 +0.4
247,452 + A4249_RS01295 0.33 +0.5
247,452 + A4249_RS01295 0.33 +0.3
247,453 - A4249_RS01295 0.33 +0.7
247,453 - A4249_RS01295 0.33 -0.2
247,453 - A4249_RS01295 0.33 -0.0
247,453 - A4249_RS01295 0.33 -0.8
247,453 - A4249_RS01295 0.33 +1.2
247,453 - A4249_RS01295 0.33 +0.2
247,453 - A4249_RS01295 0.33 -1.5
247,486 + A4249_RS01295 0.35 -0.5
247,487 - A4249_RS01295 0.35 -0.3
247,487 - A4249_RS01295 0.35 -0.2
247,487 - A4249_RS01295 0.35 +0.2
247,487 - A4249_RS01295 0.35 -0.8
247,610 + A4249_RS01295 0.43 -0.1
247,611 + A4249_RS01295 0.43 -0.9
247,611 + A4249_RS01295 0.43 -0.1
247,611 + A4249_RS01295 0.43 -1.4
247,611 + A4249_RS01295 0.43 +1.6
247,611 + A4249_RS01295 0.43 -0.3
247,612 - A4249_RS01295 0.43 +1.2
247,612 - A4249_RS01295 0.43 +0.2
247,612 - A4249_RS01295 0.43 +0.4
247,612 - A4249_RS01295 0.43 -1.3
247,612 - A4249_RS01295 0.43 -0.4
247,612 - A4249_RS01295 0.43 -0.8
247,612 - A4249_RS01295 0.43 -0.0
247,662 + A4249_RS01295 0.46 +0.3
247,663 - A4249_RS01295 0.46 +0.3
247,663 - A4249_RS01295 0.46 +0.5

Or see this region's nucleotide sequence