Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00575

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00570 and A4249_RS00575 are separated by 72 nucleotidesA4249_RS00575 and A4249_RS00580 overlap by 8 nucleotidesA4249_RS00580 and A4249_RS00585 are separated by 70 nucleotides A4249_RS00570: A4249_RS00570 - hypothetical protein, at 101,294 to 102,412 _RS00570 A4249_RS00575: A4249_RS00575 - hypothetical protein, at 102,485 to 103,186 _RS00575 A4249_RS00580: A4249_RS00580 - helix-turn-helix transcriptional regulator, at 103,179 to 103,388 _RS00580 A4249_RS00585: A4249_RS00585 - Ada metal-binding domain-containing protein, at 103,459 to 104,538 _RS00585 Position (kb) 102 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1at 101.534 kb on + strand, within A4249_RS00570at 101.534 kb on + strand, within A4249_RS00570at 101.534 kb on + strand, within A4249_RS00570at 101.535 kb on - strand, within A4249_RS00570at 101.535 kb on - strand, within A4249_RS00570at 101.630 kb on + strand, within A4249_RS00570at 101.630 kb on + strand, within A4249_RS00570at 101.630 kb on + strand, within A4249_RS00570at 101.630 kb on + strand, within A4249_RS00570at 101.630 kb on + strand, within A4249_RS00570at 101.630 kb on + strand, within A4249_RS00570at 101.630 kb on + strand, within A4249_RS00570at 101.630 kb on + strand, within A4249_RS00570at 101.630 kb on + strand, within A4249_RS00570at 101.631 kb on - strand, within A4249_RS00570at 101.631 kb on - strand, within A4249_RS00570at 101.631 kb on - strand, within A4249_RS00570at 101.631 kb on - strand, within A4249_RS00570at 101.631 kb on - strand, within A4249_RS00570at 101.631 kb on - strand, within A4249_RS00570at 101.631 kb on - strand, within A4249_RS00570at 101.631 kb on - strand, within A4249_RS00570at 102.038 kb on + strand, within A4249_RS00570at 102.039 kb on - strand, within A4249_RS00570at 102.074 kb on + strand, within A4249_RS00570at 102.781 kb on + strand, within A4249_RS00575at 102.781 kb on + strand, within A4249_RS00575at 102.782 kb on - strand, within A4249_RS00575at 102.801 kb on - strand, within A4249_RS00575at 102.801 kb on - strand, within A4249_RS00575at 102.884 kb on + strand, within A4249_RS00575at 102.884 kb on + strand, within A4249_RS00575at 102.884 kb on + strand, within A4249_RS00575at 102.884 kb on + strand, within A4249_RS00575at 102.884 kb on + strand, within A4249_RS00575at 102.885 kb on - strand, within A4249_RS00575at 102.885 kb on - strand, within A4249_RS00575at 102.885 kb on - strand, within A4249_RS00575at 102.885 kb on - strand, within A4249_RS00575at 102.885 kb on - strand, within A4249_RS00575at 102.885 kb on - strand, within A4249_RS00575at 102.885 kb on - strand, within A4249_RS00575at 102.885 kb on - strand, within A4249_RS00575at 102.911 kb on + strand, within A4249_RS00575at 102.911 kb on + strand, within A4249_RS00575at 103.286 kb on + strand, within A4249_RS00580at 103.286 kb on + strand, within A4249_RS00580at 103.287 kb on - strand, within A4249_RS00580at 103.549 kb on + strandat 103.549 kb on + strandat 103.549 kb on + strandat 103.549 kb on + strandat 103.549 kb on + strandat 103.549 kb on + strandat 103.549 kb on + strandat 103.549 kb on + strandat 103.549 kb on + strandat 103.549 kb on + strandat 103.550 kb on - strandat 103.550 kb on - strandat 103.550 kb on - strandat 103.550 kb on - strandat 103.550 kb on - strandat 103.550 kb on - strandat 103.550 kb on - strandat 103.550 kb on - strandat 103.550 kb on - strandat 103.550 kb on - strandat 103.709 kb on + strand, within A4249_RS00585at 103.709 kb on + strand, within A4249_RS00585at 103.709 kb on + strand, within A4249_RS00585at 103.709 kb on + strand, within A4249_RS00585at 103.709 kb on + strand, within A4249_RS00585at 103.709 kb on + strand, within A4249_RS00585at 103.710 kb on - strand, within A4249_RS00585at 103.710 kb on - strand, within A4249_RS00585at 103.710 kb on - strand, within A4249_RS00585at 103.710 kb on - strand, within A4249_RS00585at 103.943 kb on + strand, within A4249_RS00585at 103.943 kb on + strand, within A4249_RS00585at 103.943 kb on + strand, within A4249_RS00585at 103.943 kb on + strand, within A4249_RS00585at 103.943 kb on + strand, within A4249_RS00585at 103.944 kb on - strand, within A4249_RS00585at 103.944 kb on - strand, within A4249_RS00585at 103.975 kb on + strand, within A4249_RS00585at 103.975 kb on + strand, within A4249_RS00585at 103.975 kb on + strand, within A4249_RS00585at 104.065 kb on + strand, within A4249_RS00585at 104.066 kb on - strand, within A4249_RS00585at 104.066 kb on - strand, within A4249_RS00585

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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101,534 + A4249_RS00570 0.21 -1.4
101,534 + A4249_RS00570 0.21 -0.2
101,534 + A4249_RS00570 0.21 -0.0
101,535 - A4249_RS00570 0.22 -0.8
101,535 - A4249_RS00570 0.22 +0.9
101,630 + A4249_RS00570 0.30 +0.8
101,630 + A4249_RS00570 0.30 -0.1
101,630 + A4249_RS00570 0.30 -0.4
101,630 + A4249_RS00570 0.30 -0.8
101,630 + A4249_RS00570 0.30 -0.5
101,630 + A4249_RS00570 0.30 -0.0
101,630 + A4249_RS00570 0.30 +0.8
101,630 + A4249_RS00570 0.30 -0.3
101,630 + A4249_RS00570 0.30 +0.9
101,631 - A4249_RS00570 0.30 -0.2
101,631 - A4249_RS00570 0.30 -0.7
101,631 - A4249_RS00570 0.30 +0.2
101,631 - A4249_RS00570 0.30 -0.3
101,631 - A4249_RS00570 0.30 -1.4
101,631 - A4249_RS00570 0.30 -0.8
101,631 - A4249_RS00570 0.30 +0.1
101,631 - A4249_RS00570 0.30 +1.4
102,038 + A4249_RS00570 0.66 +0.1
102,039 - A4249_RS00570 0.67 +1.7
102,074 + A4249_RS00570 0.70 -0.6
102,781 + A4249_RS00575 0.42 +0.0
102,781 + A4249_RS00575 0.42 +1.2
102,782 - A4249_RS00575 0.42 -0.5
102,801 - A4249_RS00575 0.45 -0.4
102,801 - A4249_RS00575 0.45 -0.2
102,884 + A4249_RS00575 0.57 -0.2
102,884 + A4249_RS00575 0.57 -0.4
102,884 + A4249_RS00575 0.57 -0.5
102,884 + A4249_RS00575 0.57 -0.2
102,884 + A4249_RS00575 0.57 -0.1
102,885 - A4249_RS00575 0.57 -1.2
102,885 - A4249_RS00575 0.57 +1.7
102,885 - A4249_RS00575 0.57 -0.8
102,885 - A4249_RS00575 0.57 +0.8
102,885 - A4249_RS00575 0.57 +0.1
102,885 - A4249_RS00575 0.57 -0.1
102,885 - A4249_RS00575 0.57 -1.4
102,885 - A4249_RS00575 0.57 +0.2
102,911 + A4249_RS00575 0.61 -1.0
102,911 + A4249_RS00575 0.61 -0.6
103,286 + A4249_RS00580 0.51 -0.3
103,286 + A4249_RS00580 0.51 -0.2
103,287 - A4249_RS00580 0.51 +0.2
103,549 + +0.1
103,549 + -0.1
103,549 + -0.6
103,549 + +0.4
103,549 + +0.8
103,549 + +0.2
103,549 + +0.7
103,549 + -0.6
103,549 + +0.6
103,549 + -0.1
103,550 - -0.5
103,550 - -0.5
103,550 - -0.1
103,550 - -0.4
103,550 - -0.2
103,550 - -0.3
103,550 - +0.8
103,550 - -0.6
103,550 - -0.2
103,550 - -0.0
103,709 + A4249_RS00585 0.23 +0.1
103,709 + A4249_RS00585 0.23 -0.4
103,709 + A4249_RS00585 0.23 -0.9
103,709 + A4249_RS00585 0.23 +0.1
103,709 + A4249_RS00585 0.23 -1.1
103,709 + A4249_RS00585 0.23 -0.3
103,710 - A4249_RS00585 0.23 -0.1
103,710 - A4249_RS00585 0.23 -0.1
103,710 - A4249_RS00585 0.23 +0.0
103,710 - A4249_RS00585 0.23 -0.3
103,943 + A4249_RS00585 0.45 -0.5
103,943 + A4249_RS00585 0.45 +0.8
103,943 + A4249_RS00585 0.45 +0.3
103,943 + A4249_RS00585 0.45 -0.8
103,943 + A4249_RS00585 0.45 -0.4
103,944 - A4249_RS00585 0.45 +0.8
103,944 - A4249_RS00585 0.45 -2.8
103,975 + A4249_RS00585 0.48 -0.5
103,975 + A4249_RS00585 0.48 -0.1
103,975 + A4249_RS00585 0.48 -0.1
104,065 + A4249_RS00585 0.56 -0.6
104,066 - A4249_RS00585 0.56 -0.2
104,066 - A4249_RS00585 0.56 -0.0

Or see this region's nucleotide sequence