Experiment: Hypoxanthine 0.7347 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00560 and A4249_RS00565 are separated by 145 nucleotides A4249_RS00565 and A4249_RS00570 are separated by 26 nucleotides A4249_RS00570 and A4249_RS00575 are separated by 72 nucleotides A4249_RS00575 and A4249_RS00580 overlap by 8 nucleotides
A4249_RS00560: A4249_RS00560 - class I SAM-dependent DNA methyltransferase, at 97,370 to 100,786
_RS00560
A4249_RS00565: A4249_RS00565 - helix-turn-helix transcriptional regulator, at 100,932 to 101,267
_RS00565
A4249_RS00570: A4249_RS00570 - hypothetical protein, at 101,294 to 102,412
_RS00570
A4249_RS00575: A4249_RS00575 - hypothetical protein, at 102,485 to 103,186
_RS00575
A4249_RS00580: A4249_RS00580 - helix-turn-helix transcriptional regulator, at 103,179 to 103,388
_RS00580
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1
2 at 100.299 kb on + strand, within A4249_RS00560 at 100.299 kb on + strand, within A4249_RS00560 at 100.299 kb on + strand, within A4249_RS00560 at 100.300 kb on - strand, within A4249_RS00560 at 100.300 kb on - strand, within A4249_RS00560 at 100.329 kb on + strand, within A4249_RS00560 at 100.329 kb on + strand, within A4249_RS00560 at 100.329 kb on + strand, within A4249_RS00560 at 100.329 kb on + strand, within A4249_RS00560 at 100.330 kb on - strand, within A4249_RS00560 at 100.330 kb on - strand, within A4249_RS00560 at 100.330 kb on - strand, within A4249_RS00560 at 100.344 kb on + strand, within A4249_RS00560 at 100.344 kb on + strand, within A4249_RS00560 at 100.344 kb on + strand, within A4249_RS00560 at 100.344 kb on + strand, within A4249_RS00560 at 100.345 kb on - strand, within A4249_RS00560 at 100.345 kb on - strand, within A4249_RS00560 at 100.345 kb on - strand, within A4249_RS00560 at 100.345 kb on - strand, within A4249_RS00560 at 100.345 kb on - strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.407 kb on + strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.408 kb on - strand, within A4249_RS00560 at 100.569 kb on + strand at 100.569 kb on + strand at 100.569 kb on + strand at 100.569 kb on + strand at 100.569 kb on + strand at 100.570 kb on - strand at 100.570 kb on - strand at 100.570 kb on - strand at 100.570 kb on - strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.638 kb on + strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.639 kb on - strand at 100.722 kb on + strand at 100.722 kb on + strand at 100.722 kb on + strand at 100.722 kb on + strand at 100.722 kb on + strand at 100.723 kb on - strand at 100.723 kb on - strand at 100.723 kb on - strand at 100.723 kb on - strand at 100.723 kb on - strand at 100.723 kb on - strand at 100.819 kb on + strand at 100.820 kb on - strand at 100.880 kb on + strand at 101.034 kb on + strand, within A4249_RS00565 at 101.034 kb on + strand, within A4249_RS00565 at 101.034 kb on + strand, within A4249_RS00565 at 101.035 kb on - strand, within A4249_RS00565 at 101.040 kb on + strand, within A4249_RS00565 at 101.178 kb on + strand, within A4249_RS00565 at 101.312 kb on + strand at 101.312 kb on + strand at 101.388 kb on + strand at 101.388 kb on + strand at 101.388 kb on + strand at 101.388 kb on + strand at 101.388 kb on + strand at 101.388 kb on + strand at 101.388 kb on + strand at 101.388 kb on + strand at 101.388 kb on + strand at 101.388 kb on + strand at 101.389 kb on - strand at 101.389 kb on - strand at 101.389 kb on - strand at 101.389 kb on - strand at 101.389 kb on - strand at 101.389 kb on - strand at 101.389 kb on - strand at 101.389 kb on - strand at 101.534 kb on + strand, within A4249_RS00570 at 101.534 kb on + strand, within A4249_RS00570 at 101.534 kb on + strand, within A4249_RS00570 at 101.535 kb on - strand, within A4249_RS00570 at 101.535 kb on - strand, within A4249_RS00570 at 101.630 kb on + strand, within A4249_RS00570 at 101.630 kb on + strand, within A4249_RS00570 at 101.630 kb on + strand, within A4249_RS00570 at 101.630 kb on + strand, within A4249_RS00570 at 101.630 kb on + strand, within A4249_RS00570 at 101.630 kb on + strand, within A4249_RS00570 at 101.630 kb on + strand, within A4249_RS00570 at 101.630 kb on + strand, within A4249_RS00570 at 101.630 kb on + strand, within A4249_RS00570 at 101.631 kb on - strand, within A4249_RS00570 at 101.631 kb on - strand, within A4249_RS00570 at 101.631 kb on - strand, within A4249_RS00570 at 101.631 kb on - strand, within A4249_RS00570 at 101.631 kb on - strand, within A4249_RS00570 at 101.631 kb on - strand, within A4249_RS00570 at 101.631 kb on - strand, within A4249_RS00570 at 101.631 kb on - strand, within A4249_RS00570 at 102.038 kb on + strand, within A4249_RS00570 at 102.039 kb on - strand, within A4249_RS00570 at 102.074 kb on + strand, within A4249_RS00570 at 102.781 kb on + strand, within A4249_RS00575 at 102.781 kb on + strand, within A4249_RS00575 at 102.782 kb on - strand, within A4249_RS00575 at 102.801 kb on - strand, within A4249_RS00575 at 102.801 kb on - strand, within A4249_RS00575 at 102.884 kb on + strand, within A4249_RS00575 at 102.884 kb on + strand, within A4249_RS00575 at 102.884 kb on + strand, within A4249_RS00575 at 102.884 kb on + strand, within A4249_RS00575 at 102.884 kb on + strand, within A4249_RS00575 at 102.885 kb on - strand, within A4249_RS00575 at 102.885 kb on - strand, within A4249_RS00575 at 102.885 kb on - strand, within A4249_RS00575 at 102.885 kb on - strand, within A4249_RS00575 at 102.885 kb on - strand, within A4249_RS00575 at 102.885 kb on - strand, within A4249_RS00575 at 102.885 kb on - strand, within A4249_RS00575 at 102.885 kb on - strand, within A4249_RS00575 at 102.911 kb on + strand, within A4249_RS00575 at 102.911 kb on + strand, within A4249_RS00575 at 103.286 kb on + strand, within A4249_RS00580 at 103.286 kb on + strand, within A4249_RS00580 at 103.287 kb on - strand, within A4249_RS00580
Per-strain Table
Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C) remove 100,299 + A4249_RS00560 0.86 -0.2 100,299 + A4249_RS00560 0.86 -0.3 100,299 + A4249_RS00560 0.86 -1.0 100,300 - A4249_RS00560 0.86 -0.1 100,300 - A4249_RS00560 0.86 -0.4 100,329 + A4249_RS00560 0.87 +0.8 100,329 + A4249_RS00560 0.87 -0.2 100,329 + A4249_RS00560 0.87 -0.3 100,329 + A4249_RS00560 0.87 -0.1 100,330 - A4249_RS00560 0.87 -0.4 100,330 - A4249_RS00560 0.87 -0.8 100,330 - A4249_RS00560 0.87 +0.1 100,344 + A4249_RS00560 0.87 -0.3 100,344 + A4249_RS00560 0.87 -0.5 100,344 + A4249_RS00560 0.87 -0.1 100,344 + A4249_RS00560 0.87 -0.5 100,345 - A4249_RS00560 0.87 +0.1 100,345 - A4249_RS00560 0.87 +0.1 100,345 - A4249_RS00560 0.87 +0.1 100,345 - A4249_RS00560 0.87 -0.1 100,345 - A4249_RS00560 0.87 +0.0 100,407 + A4249_RS00560 0.89 +0.2 100,407 + A4249_RS00560 0.89 -0.4 100,407 + A4249_RS00560 0.89 +0.1 100,407 + A4249_RS00560 0.89 +0.8 100,407 + A4249_RS00560 0.89 -0.0 100,407 + A4249_RS00560 0.89 -0.2 100,407 + A4249_RS00560 0.89 -0.4 100,407 + A4249_RS00560 0.89 +0.4 100,407 + A4249_RS00560 0.89 -1.2 100,407 + A4249_RS00560 0.89 +0.6 100,407 + A4249_RS00560 0.89 +0.3 100,408 - A4249_RS00560 0.89 -1.0 100,408 - A4249_RS00560 0.89 -0.7 100,408 - A4249_RS00560 0.89 +0.3 100,408 - A4249_RS00560 0.89 +0.2 100,408 - A4249_RS00560 0.89 -0.2 100,408 - A4249_RS00560 0.89 -0.4 100,408 - A4249_RS00560 0.89 -1.1 100,408 - A4249_RS00560 0.89 -0.4 100,408 - A4249_RS00560 0.89 -0.7 100,408 - A4249_RS00560 0.89 -0.5 100,569 + -0.4 100,569 + -0.2 100,569 + -0.3 100,569 + +0.3 100,569 + -0.6 100,570 - +0.1 100,570 - -0.2 100,570 - -1.4 100,570 - -0.8 100,638 + -0.3 100,638 + -0.0 100,638 + -0.2 100,638 + -0.4 100,638 + -1.0 100,638 + -0.2 100,638 + +0.2 100,638 + -0.7 100,638 + -0.9 100,638 + -0.7 100,638 + -0.1 100,639 - -0.7 100,639 - -0.5 100,639 - -0.5 100,639 - -0.4 100,639 - +0.6 100,639 - -0.4 100,639 - -0.1 100,639 - +0.3 100,639 - -0.3 100,639 - -0.0 100,639 - -0.6 100,639 - +0.6 100,639 - -0.3 100,639 - +0.1 100,722 + -0.2 100,722 + -0.3 100,722 + +0.4 100,722 + -0.3 100,722 + +0.4 100,723 - -0.7 100,723 - -0.1 100,723 - -0.2 100,723 - -0.6 100,723 - -0.2 100,723 - -0.5 100,819 + +1.4 100,820 - -0.2 100,880 + -0.4 101,034 + A4249_RS00565 0.30 +0.1 101,034 + A4249_RS00565 0.30 -0.2 101,034 + A4249_RS00565 0.30 +0.0 101,035 - A4249_RS00565 0.31 +1.2 101,040 + A4249_RS00565 0.32 -0.5 101,178 + A4249_RS00565 0.73 +0.3 101,312 + -0.2 101,312 + -0.3 101,388 + +2.4 101,388 + -0.6 101,388 + -1.0 101,388 + -0.2 101,388 + -1.8 101,388 + +0.8 101,388 + -0.9 101,388 + -0.6 101,388 + +0.1 101,388 + -0.4 101,389 - -0.1 101,389 - +0.0 101,389 - +0.4 101,389 - -0.1 101,389 - +0.7 101,389 - -0.8 101,389 - -1.3 101,389 - +0.2 101,534 + A4249_RS00570 0.21 -1.4 101,534 + A4249_RS00570 0.21 -0.2 101,534 + A4249_RS00570 0.21 -0.0 101,535 - A4249_RS00570 0.22 -0.8 101,535 - A4249_RS00570 0.22 +0.9 101,630 + A4249_RS00570 0.30 +0.8 101,630 + A4249_RS00570 0.30 -0.1 101,630 + A4249_RS00570 0.30 -0.4 101,630 + A4249_RS00570 0.30 -0.8 101,630 + A4249_RS00570 0.30 -0.5 101,630 + A4249_RS00570 0.30 -0.0 101,630 + A4249_RS00570 0.30 +0.8 101,630 + A4249_RS00570 0.30 -0.3 101,630 + A4249_RS00570 0.30 +0.9 101,631 - A4249_RS00570 0.30 -0.2 101,631 - A4249_RS00570 0.30 -0.7 101,631 - A4249_RS00570 0.30 +0.2 101,631 - A4249_RS00570 0.30 -0.3 101,631 - A4249_RS00570 0.30 -1.4 101,631 - A4249_RS00570 0.30 -0.8 101,631 - A4249_RS00570 0.30 +0.1 101,631 - A4249_RS00570 0.30 +1.4 102,038 + A4249_RS00570 0.66 +0.1 102,039 - A4249_RS00570 0.67 +1.7 102,074 + A4249_RS00570 0.70 -0.6 102,781 + A4249_RS00575 0.42 +0.0 102,781 + A4249_RS00575 0.42 +1.2 102,782 - A4249_RS00575 0.42 -0.5 102,801 - A4249_RS00575 0.45 -0.4 102,801 - A4249_RS00575 0.45 -0.2 102,884 + A4249_RS00575 0.57 -0.2 102,884 + A4249_RS00575 0.57 -0.4 102,884 + A4249_RS00575 0.57 -0.5 102,884 + A4249_RS00575 0.57 -0.2 102,884 + A4249_RS00575 0.57 -0.1 102,885 - A4249_RS00575 0.57 -1.2 102,885 - A4249_RS00575 0.57 +1.7 102,885 - A4249_RS00575 0.57 -0.8 102,885 - A4249_RS00575 0.57 +0.8 102,885 - A4249_RS00575 0.57 +0.1 102,885 - A4249_RS00575 0.57 -0.1 102,885 - A4249_RS00575 0.57 -1.4 102,885 - A4249_RS00575 0.57 +0.2 102,911 + A4249_RS00575 0.61 -1.0 102,911 + A4249_RS00575 0.61 -0.6 103,286 + A4249_RS00580 0.51 -0.3 103,286 + A4249_RS00580 0.51 -0.2 103,287 - A4249_RS00580 0.51 +0.2
Or see this region's nucleotide sequence