Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00520

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00510 and A4249_RS00515 overlap by 1 nucleotidesA4249_RS00515 and A4249_RS00520 are separated by 87 nucleotidesA4249_RS00520 and A4249_RS00525 are separated by 97 nucleotides A4249_RS00510: A4249_RS00510 - DNA repair protein RadC, at 84,839 to 85,591 _RS00510 A4249_RS00515: A4249_RS00515 - hypothetical protein, at 85,591 to 86,082 _RS00515 A4249_RS00520: A4249_RS00520 - type I methionyl aminopeptidase, at 86,170 to 86,988 _RS00520 A4249_RS00525: A4249_RS00525 - molybdopterin-binding protein, at 87,086 to 87,853 _RS00525 Position (kb) 86 87Strain fitness (log2 ratio) -2 -1 0 1at 85.179 kb on + strand, within A4249_RS00510at 85.179 kb on + strand, within A4249_RS00510at 85.179 kb on + strand, within A4249_RS00510at 85.180 kb on - strand, within A4249_RS00510at 85.308 kb on + strand, within A4249_RS00510at 85.309 kb on - strand, within A4249_RS00510at 85.309 kb on - strand, within A4249_RS00510at 85.421 kb on - strand, within A4249_RS00510at 85.422 kb on + strand, within A4249_RS00510at 85.422 kb on + strand, within A4249_RS00510at 85.422 kb on + strand, within A4249_RS00510at 85.422 kb on + strand, within A4249_RS00510at 85.423 kb on - strand, within A4249_RS00510at 85.423 kb on - strand, within A4249_RS00510at 85.423 kb on - strand, within A4249_RS00510at 85.423 kb on - strand, within A4249_RS00510at 85.423 kb on - strand, within A4249_RS00510at 85.461 kb on + strand, within A4249_RS00510at 85.461 kb on + strand, within A4249_RS00510at 85.461 kb on + strand, within A4249_RS00510at 85.592 kb on + strandat 85.592 kb on + strandat 85.592 kb on + strandat 85.593 kb on - strandat 85.700 kb on + strand, within A4249_RS00515at 85.700 kb on + strand, within A4249_RS00515at 85.701 kb on - strand, within A4249_RS00515at 85.701 kb on - strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.800 kb on + strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.801 kb on - strand, within A4249_RS00515at 85.832 kb on + strand, within A4249_RS00515at 85.832 kb on + strand, within A4249_RS00515at 85.832 kb on + strand, within A4249_RS00515at 85.833 kb on - strand, within A4249_RS00515at 85.880 kb on + strand, within A4249_RS00515at 85.880 kb on + strand, within A4249_RS00515at 85.880 kb on + strand, within A4249_RS00515at 85.881 kb on - strand, within A4249_RS00515at 85.881 kb on - strand, within A4249_RS00515at 85.881 kb on - strand, within A4249_RS00515at 85.881 kb on - strand, within A4249_RS00515at 85.881 kb on - strand, within A4249_RS00515at 86.062 kb on + strandat 86.069 kb on + strandat 86.070 kb on - strandat 86.082 kb on + strandat 86.082 kb on + strandat 86.082 kb on + strandat 86.082 kb on + strandat 86.082 kb on + strandat 86.082 kb on + strandat 86.082 kb on + strandat 86.083 kb on - strandat 86.083 kb on - strandat 86.083 kb on - strandat 86.103 kb on + strandat 86.115 kb on - strandat 86.985 kb on - strandat 87.047 kb on + strandat 87.048 kb on + strandat 87.048 kb on + strandat 87.049 kb on - strandat 87.049 kb on - strandat 87.049 kb on - strandat 87.049 kb on - strandat 87.050 kb on + strandat 87.050 kb on + strandat 87.050 kb on + strandat 87.050 kb on + strandat 87.050 kb on + strandat 87.050 kb on + strandat 87.050 kb on + strandat 87.050 kb on + strandat 87.050 kb on + strandat 87.050 kb on + strandat 87.051 kb on - strandat 87.051 kb on - strandat 87.051 kb on - strandat 87.051 kb on - strandat 87.051 kb on - strandat 87.051 kb on - strandat 87.051 kb on - strandat 87.299 kb on + strand, within A4249_RS00525at 87.299 kb on + strand, within A4249_RS00525at 87.299 kb on + strand, within A4249_RS00525at 87.299 kb on + strand, within A4249_RS00525at 87.299 kb on + strand, within A4249_RS00525at 87.299 kb on + strand, within A4249_RS00525at 87.299 kb on + strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.300 kb on - strand, within A4249_RS00525at 87.422 kb on + strand, within A4249_RS00525at 87.423 kb on - strand, within A4249_RS00525at 87.713 kb on + strand, within A4249_RS00525at 87.713 kb on + strand, within A4249_RS00525at 87.714 kb on - strand, within A4249_RS00525at 87.714 kb on - strand, within A4249_RS00525at 87.823 kb on + strandat 87.828 kb on + strandat 87.828 kb on + strandat 87.829 kb on - strandat 87.984 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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85,179 + A4249_RS00510 0.45 -1.0
85,179 + A4249_RS00510 0.45 -0.2
85,179 + A4249_RS00510 0.45 -0.4
85,180 - A4249_RS00510 0.45 +0.3
85,308 + A4249_RS00510 0.62 -1.2
85,309 - A4249_RS00510 0.62 -0.7
85,309 - A4249_RS00510 0.62 -0.2
85,421 - A4249_RS00510 0.77 +0.2
85,422 + A4249_RS00510 0.77 +0.1
85,422 + A4249_RS00510 0.77 -0.1
85,422 + A4249_RS00510 0.77 -1.7
85,422 + A4249_RS00510 0.77 -0.1
85,423 - A4249_RS00510 0.78 +0.5
85,423 - A4249_RS00510 0.78 -1.3
85,423 - A4249_RS00510 0.78 -0.4
85,423 - A4249_RS00510 0.78 +0.1
85,423 - A4249_RS00510 0.78 +0.4
85,461 + A4249_RS00510 0.83 -0.6
85,461 + A4249_RS00510 0.83 -0.2
85,461 + A4249_RS00510 0.83 -0.4
85,592 + +0.2
85,592 + -1.0
85,592 + -0.2
85,593 - +0.1
85,700 + A4249_RS00515 0.22 +1.5
85,700 + A4249_RS00515 0.22 -0.1
85,701 - A4249_RS00515 0.22 -0.9
85,701 - A4249_RS00515 0.22 +0.1
85,800 + A4249_RS00515 0.42 +0.3
85,800 + A4249_RS00515 0.42 +1.2
85,800 + A4249_RS00515 0.42 +0.2
85,800 + A4249_RS00515 0.42 -0.2
85,800 + A4249_RS00515 0.42 -0.1
85,800 + A4249_RS00515 0.42 +0.7
85,800 + A4249_RS00515 0.42 -0.1
85,800 + A4249_RS00515 0.42 +0.2
85,800 + A4249_RS00515 0.42 +0.4
85,800 + A4249_RS00515 0.42 -1.1
85,800 + A4249_RS00515 0.42 -0.9
85,801 - A4249_RS00515 0.43 -0.2
85,801 - A4249_RS00515 0.43 +0.7
85,801 - A4249_RS00515 0.43 -0.3
85,801 - A4249_RS00515 0.43 +0.5
85,801 - A4249_RS00515 0.43 -0.7
85,801 - A4249_RS00515 0.43 -0.7
85,801 - A4249_RS00515 0.43 -0.2
85,801 - A4249_RS00515 0.43 -0.1
85,801 - A4249_RS00515 0.43 -0.3
85,801 - A4249_RS00515 0.43 -0.1
85,832 + A4249_RS00515 0.49 +0.6
85,832 + A4249_RS00515 0.49 -0.1
85,832 + A4249_RS00515 0.49 +0.1
85,833 - A4249_RS00515 0.49 -1.0
85,880 + A4249_RS00515 0.59 -0.6
85,880 + A4249_RS00515 0.59 -1.1
85,880 + A4249_RS00515 0.59 -0.1
85,881 - A4249_RS00515 0.59 -0.1
85,881 - A4249_RS00515 0.59 -0.3
85,881 - A4249_RS00515 0.59 +0.4
85,881 - A4249_RS00515 0.59 +0.3
85,881 - A4249_RS00515 0.59 +0.8
86,062 + -0.2
86,069 + -0.4
86,070 - +0.0
86,082 + -0.7
86,082 + +0.3
86,082 + +0.2
86,082 + +0.1
86,082 + -2.0
86,082 + +0.4
86,082 + -0.6
86,083 - +0.5
86,083 - -0.3
86,083 - +0.5
86,103 + -0.2
86,115 - -0.4
86,985 - -0.4
87,047 + -0.2
87,048 + -0.7
87,048 + +1.3
87,049 - -0.2
87,049 - +1.4
87,049 - -0.3
87,049 - +0.3
87,050 + +0.2
87,050 + -0.8
87,050 + -0.0
87,050 + +0.3
87,050 + +0.1
87,050 + -0.0
87,050 + +0.2
87,050 + +0.2
87,050 + -0.4
87,050 + -0.4
87,051 - +0.6
87,051 - -0.2
87,051 - -1.1
87,051 - +0.5
87,051 - +1.2
87,051 - -0.9
87,051 - -1.0
87,299 + A4249_RS00525 0.28 -0.3
87,299 + A4249_RS00525 0.28 -0.4
87,299 + A4249_RS00525 0.28 +0.1
87,299 + A4249_RS00525 0.28 -0.4
87,299 + A4249_RS00525 0.28 +0.4
87,299 + A4249_RS00525 0.28 -0.6
87,299 + A4249_RS00525 0.28 +0.5
87,300 - A4249_RS00525 0.28 -2.5
87,300 - A4249_RS00525 0.28 +0.6
87,300 - A4249_RS00525 0.28 -0.5
87,300 - A4249_RS00525 0.28 -0.1
87,300 - A4249_RS00525 0.28 -0.4
87,300 - A4249_RS00525 0.28 +0.6
87,300 - A4249_RS00525 0.28 -0.2
87,300 - A4249_RS00525 0.28 -0.1
87,300 - A4249_RS00525 0.28 +1.2
87,300 - A4249_RS00525 0.28 -1.2
87,422 + A4249_RS00525 0.44 -0.6
87,423 - A4249_RS00525 0.44 +0.3
87,713 + A4249_RS00525 0.82 +0.9
87,713 + A4249_RS00525 0.82 -0.3
87,714 - A4249_RS00525 0.82 +0.8
87,714 - A4249_RS00525 0.82 -0.3
87,823 + +0.1
87,828 + -0.2
87,828 + -0.6
87,829 - -0.8
87,984 + -1.3

Or see this region's nucleotide sequence