Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16100

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS16090 and A4249_RS16095 are separated by 64 nucleotidesA4249_RS16095 and A4249_RS16100 are separated by 272 nucleotidesA4249_RS16100 and A4249_RS16105 are separated by 29 nucleotides A4249_RS16090: A4249_RS16090 - DUF1150 domain-containing protein, at 3,240,169 to 3,240,419 _RS16090 A4249_RS16095: A4249_RS16095 - Hsp20 family protein, at 3,240,484 to 3,240,921 _RS16095 A4249_RS16100: A4249_RS16100 - ammonium transporter, at 3,241,194 to 3,242,507 _RS16100 A4249_RS16105: A4249_RS16105 - glutamate synthase large subunit, at 3,242,537 to 3,247,048 _RS16105 Position (kb) 3241 3242 3243Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3240.274 kb on + strand, within A4249_RS16090at 3240.274 kb on + strand, within A4249_RS16090at 3240.274 kb on + strand, within A4249_RS16090at 3240.274 kb on + strand, within A4249_RS16090at 3240.275 kb on - strand, within A4249_RS16090at 3240.275 kb on - strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.358 kb on + strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.359 kb on - strand, within A4249_RS16090at 3240.421 kb on - strandat 3240.421 kb on - strandat 3240.421 kb on - strandat 3240.437 kb on + strandat 3240.437 kb on + strandat 3240.437 kb on + strandat 3240.437 kb on + strandat 3240.438 kb on - strandat 3240.438 kb on - strandat 3240.438 kb on - strandat 3240.438 kb on - strandat 3240.438 kb on - strandat 3240.510 kb on + strandat 3240.510 kb on + strandat 3240.511 kb on - strandat 3240.511 kb on - strandat 3240.810 kb on - strand, within A4249_RS16095at 3240.810 kb on - strand, within A4249_RS16095at 3240.810 kb on - strand, within A4249_RS16095at 3240.810 kb on - strand, within A4249_RS16095at 3240.810 kb on - strand, within A4249_RS16095at 3240.819 kb on - strand, within A4249_RS16095at 3240.819 kb on - strand, within A4249_RS16095at 3241.091 kb on + strandat 3241.092 kb on - strandat 3241.092 kb on - strandat 3241.092 kb on - strandat 3241.092 kb on - strandat 3241.126 kb on - strandat 3241.196 kb on - strandat 3241.220 kb on + strandat 3241.220 kb on + strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.221 kb on - strandat 3241.222 kb on + strandat 3241.222 kb on + strandat 3241.222 kb on + strandat 3241.223 kb on - strandat 3241.223 kb on - strandat 3241.468 kb on + strand, within A4249_RS16100at 3241.468 kb on + strand, within A4249_RS16100at 3241.504 kb on + strand, within A4249_RS16100at 3241.504 kb on + strand, within A4249_RS16100at 3241.504 kb on + strand, within A4249_RS16100at 3241.504 kb on + strand, within A4249_RS16100at 3241.505 kb on - strand, within A4249_RS16100at 3241.505 kb on - strand, within A4249_RS16100at 3241.505 kb on - strand, within A4249_RS16100at 3241.505 kb on - strand, within A4249_RS16100at 3241.790 kb on + strand, within A4249_RS16100at 3241.792 kb on + strand, within A4249_RS16100at 3241.792 kb on + strand, within A4249_RS16100at 3241.792 kb on + strand, within A4249_RS16100at 3241.792 kb on + strand, within A4249_RS16100at 3241.792 kb on + strand, within A4249_RS16100at 3241.792 kb on + strand, within A4249_RS16100at 3241.792 kb on + strand, within A4249_RS16100at 3241.792 kb on + strand, within A4249_RS16100at 3241.792 kb on + strand, within A4249_RS16100at 3241.793 kb on - strand, within A4249_RS16100at 3241.793 kb on - strand, within A4249_RS16100at 3241.793 kb on - strand, within A4249_RS16100at 3241.793 kb on - strand, within A4249_RS16100at 3241.793 kb on - strand, within A4249_RS16100at 3241.793 kb on - strand, within A4249_RS16100at 3241.793 kb on - strand, within A4249_RS16100at 3241.793 kb on - strand, within A4249_RS16100at 3241.793 kb on - strand, within A4249_RS16100at 3241.972 kb on + strand, within A4249_RS16100at 3241.972 kb on + strand, within A4249_RS16100at 3241.972 kb on + strand, within A4249_RS16100at 3241.972 kb on + strand, within A4249_RS16100at 3241.972 kb on + strand, within A4249_RS16100at 3241.972 kb on + strand, within A4249_RS16100at 3242.318 kb on - strand, within A4249_RS16100at 3242.519 kb on - strandat 3242.519 kb on - strandat 3242.857 kb on + strandat 3242.857 kb on + strandat 3242.857 kb on + strandat 3242.857 kb on + strandat 3242.857 kb on + strandat 3242.857 kb on + strandat 3242.857 kb on + strandat 3242.857 kb on + strandat 3242.858 kb on - strandat 3242.858 kb on - strandat 3242.858 kb on - strandat 3242.858 kb on - strandat 3242.858 kb on - strandat 3242.858 kb on - strandat 3242.858 kb on - strandat 3242.858 kb on - strandat 3242.858 kb on - strandat 3242.859 kb on + strandat 3242.859 kb on + strandat 3242.859 kb on + strandat 3242.859 kb on + strandat 3242.860 kb on - strandat 3242.860 kb on - strandat 3242.860 kb on - strandat 3242.860 kb on - strandat 3242.974 kb on - strandat 3242.974 kb on - strandat 3243.063 kb on + strand, within A4249_RS16105at 3243.063 kb on + strand, within A4249_RS16105at 3243.063 kb on + strand, within A4249_RS16105at 3243.063 kb on + strand, within A4249_RS16105at 3243.063 kb on + strand, within A4249_RS16105at 3243.064 kb on - strand, within A4249_RS16105at 3243.064 kb on - strand, within A4249_RS16105at 3243.064 kb on - strand, within A4249_RS16105at 3243.246 kb on + strand, within A4249_RS16105at 3243.246 kb on + strand, within A4249_RS16105at 3243.247 kb on - strand, within A4249_RS16105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
3,240,274 + A4249_RS16090 0.42 -0.9
3,240,274 + A4249_RS16090 0.42 -0.1
3,240,274 + A4249_RS16090 0.42 +0.0
3,240,274 + A4249_RS16090 0.42 -0.3
3,240,275 - A4249_RS16090 0.42 +0.3
3,240,275 - A4249_RS16090 0.42 +0.5
3,240,358 + A4249_RS16090 0.75 -0.1
3,240,358 + A4249_RS16090 0.75 -0.5
3,240,358 + A4249_RS16090 0.75 -0.2
3,240,358 + A4249_RS16090 0.75 +0.5
3,240,358 + A4249_RS16090 0.75 +0.5
3,240,359 - A4249_RS16090 0.76 -0.2
3,240,359 - A4249_RS16090 0.76 +1.5
3,240,359 - A4249_RS16090 0.76 -0.2
3,240,359 - A4249_RS16090 0.76 +0.0
3,240,359 - A4249_RS16090 0.76 +0.0
3,240,359 - A4249_RS16090 0.76 +0.4
3,240,359 - A4249_RS16090 0.76 +0.1
3,240,359 - A4249_RS16090 0.76 -0.1
3,240,359 - A4249_RS16090 0.76 +0.5
3,240,359 - A4249_RS16090 0.76 -0.3
3,240,421 - -0.2
3,240,421 - +0.1
3,240,421 - -0.5
3,240,437 + -0.2
3,240,437 + +0.1
3,240,437 + +0.2
3,240,437 + +0.3
3,240,438 - -0.1
3,240,438 - -0.2
3,240,438 - +0.3
3,240,438 - -2.6
3,240,438 - -0.1
3,240,510 + -0.3
3,240,510 + -0.0
3,240,511 - +0.7
3,240,511 - +0.4
3,240,810 - A4249_RS16095 0.74 +0.2
3,240,810 - A4249_RS16095 0.74 +0.4
3,240,810 - A4249_RS16095 0.74 +0.7
3,240,810 - A4249_RS16095 0.74 +2.8
3,240,810 - A4249_RS16095 0.74 +0.7
3,240,819 - A4249_RS16095 0.76 -0.3
3,240,819 - A4249_RS16095 0.76 +0.1
3,241,091 + +0.5
3,241,092 - -0.1
3,241,092 - +0.1
3,241,092 - +0.2
3,241,092 - -0.6
3,241,126 - -0.6
3,241,196 - +0.2
3,241,220 + -0.4
3,241,220 + +0.0
3,241,221 - -0.1
3,241,221 - -0.7
3,241,221 - -0.4
3,241,221 - +0.1
3,241,221 - +0.3
3,241,221 - +0.0
3,241,221 - -0.3
3,241,221 - -0.5
3,241,222 + -0.1
3,241,222 + -0.2
3,241,222 + +0.1
3,241,223 - +0.1
3,241,223 - +0.7
3,241,468 + A4249_RS16100 0.21 +0.6
3,241,468 + A4249_RS16100 0.21 -0.6
3,241,504 + A4249_RS16100 0.24 -0.5
3,241,504 + A4249_RS16100 0.24 -0.0
3,241,504 + A4249_RS16100 0.24 +0.2
3,241,504 + A4249_RS16100 0.24 -2.5
3,241,505 - A4249_RS16100 0.24 -0.4
3,241,505 - A4249_RS16100 0.24 +0.0
3,241,505 - A4249_RS16100 0.24 +0.6
3,241,505 - A4249_RS16100 0.24 +0.7
3,241,790 + A4249_RS16100 0.45 +1.0
3,241,792 + A4249_RS16100 0.46 -1.3
3,241,792 + A4249_RS16100 0.46 +0.3
3,241,792 + A4249_RS16100 0.46 +0.7
3,241,792 + A4249_RS16100 0.46 +0.7
3,241,792 + A4249_RS16100 0.46 -0.1
3,241,792 + A4249_RS16100 0.46 +0.0
3,241,792 + A4249_RS16100 0.46 -0.8
3,241,792 + A4249_RS16100 0.46 +0.1
3,241,792 + A4249_RS16100 0.46 -0.2
3,241,793 - A4249_RS16100 0.46 -0.1
3,241,793 - A4249_RS16100 0.46 -0.0
3,241,793 - A4249_RS16100 0.46 +0.2
3,241,793 - A4249_RS16100 0.46 +0.2
3,241,793 - A4249_RS16100 0.46 +0.3
3,241,793 - A4249_RS16100 0.46 +0.1
3,241,793 - A4249_RS16100 0.46 -0.6
3,241,793 - A4249_RS16100 0.46 +0.8
3,241,793 - A4249_RS16100 0.46 +0.3
3,241,972 + A4249_RS16100 0.59 -1.2
3,241,972 + A4249_RS16100 0.59 -0.1
3,241,972 + A4249_RS16100 0.59 +0.7
3,241,972 + A4249_RS16100 0.59 +0.2
3,241,972 + A4249_RS16100 0.59 -0.2
3,241,972 + A4249_RS16100 0.59 +0.7
3,242,318 - A4249_RS16100 0.86 +0.0
3,242,519 - +0.6
3,242,519 - +0.2
3,242,857 + -0.7
3,242,857 + -1.5
3,242,857 + -0.1
3,242,857 + +0.3
3,242,857 + +0.4
3,242,857 + +0.3
3,242,857 + -0.4
3,242,857 + +0.8
3,242,858 - +0.6
3,242,858 - +0.3
3,242,858 - -0.5
3,242,858 - +1.1
3,242,858 - +0.6
3,242,858 - -0.2
3,242,858 - +0.1
3,242,858 - +1.0
3,242,858 - -0.1
3,242,859 + +0.6
3,242,859 + -0.1
3,242,859 + -0.2
3,242,859 + +0.5
3,242,860 - +1.3
3,242,860 - -0.2
3,242,860 - -0.2
3,242,860 - +0.1
3,242,974 - +1.7
3,242,974 - +0.7
3,243,063 + A4249_RS16105 0.12 +0.1
3,243,063 + A4249_RS16105 0.12 -0.0
3,243,063 + A4249_RS16105 0.12 +1.5
3,243,063 + A4249_RS16105 0.12 -0.2
3,243,063 + A4249_RS16105 0.12 +0.2
3,243,064 - A4249_RS16105 0.12 -0.3
3,243,064 - A4249_RS16105 0.12 -0.5
3,243,064 - A4249_RS16105 0.12 +3.2
3,243,246 + A4249_RS16105 0.16 -0.3
3,243,246 + A4249_RS16105 0.16 +0.5
3,243,247 - A4249_RS16105 0.16 +1.1

Or see this region's nucleotide sequence