Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15995

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15985 and A4249_RS15990 overlap by 4 nucleotidesA4249_RS15990 and A4249_RS15995 overlap by 4 nucleotidesA4249_RS15995 and A4249_RS16000 are separated by 123 nucleotides A4249_RS15985: A4249_RS15985 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,223,539 to 3,224,339 _RS15985 A4249_RS15990: A4249_RS15990 - nucleotidyltransferase family protein, at 3,224,336 to 3,224,911 _RS15990 A4249_RS15995: A4249_RS15995 - DUF983 domain-containing protein, at 3,224,908 to 3,225,297 _RS15995 A4249_RS16000: A4249_RS16000 - hypothetical protein, at 3,225,421 to 3,228,270 _RS16000 Position (kb) 3224 3225 3226Strain fitness (log2 ratio) -2 -1 0 1at 3224.456 kb on + strand, within A4249_RS15990at 3224.457 kb on - strand, within A4249_RS15990at 3224.457 kb on - strand, within A4249_RS15990at 3224.457 kb on - strand, within A4249_RS15990at 3224.514 kb on - strand, within A4249_RS15990at 3224.514 kb on - strand, within A4249_RS15990at 3224.514 kb on - strand, within A4249_RS15990at 3224.525 kb on + strand, within A4249_RS15990at 3224.526 kb on - strand, within A4249_RS15990at 3224.549 kb on + strand, within A4249_RS15990at 3224.549 kb on + strand, within A4249_RS15990at 3224.549 kb on + strand, within A4249_RS15990at 3224.549 kb on + strand, within A4249_RS15990at 3224.550 kb on - strand, within A4249_RS15990at 3224.550 kb on - strand, within A4249_RS15990at 3224.550 kb on - strand, within A4249_RS15990at 3224.550 kb on - strand, within A4249_RS15990at 3224.675 kb on + strand, within A4249_RS15990at 3224.675 kb on + strand, within A4249_RS15990at 3224.676 kb on - strand, within A4249_RS15990at 3224.676 kb on - strand, within A4249_RS15990at 3224.676 kb on - strand, within A4249_RS15990at 3224.676 kb on - strand, within A4249_RS15990at 3224.909 kb on + strandat 3224.909 kb on + strandat 3224.909 kb on + strandat 3224.909 kb on + strandat 3224.910 kb on - strandat 3224.910 kb on - strandat 3224.910 kb on - strandat 3224.910 kb on - strandat 3224.910 kb on - strandat 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.966 kb on + strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3224.967 kb on - strand, within A4249_RS15995at 3225.167 kb on + strand, within A4249_RS15995at 3225.167 kb on + strand, within A4249_RS15995at 3225.167 kb on + strand, within A4249_RS15995at 3225.168 kb on - strand, within A4249_RS15995at 3225.209 kb on + strand, within A4249_RS15995at 3225.209 kb on + strand, within A4249_RS15995at 3225.306 kb on + strandat 3225.306 kb on + strandat 3225.306 kb on + strandat 3225.307 kb on - strandat 3225.317 kb on - strandat 3225.317 kb on - strandat 3225.348 kb on + strandat 3225.349 kb on - strandat 3225.349 kb on - strandat 3225.390 kb on + strandat 3225.420 kb on + strandat 3225.420 kb on + strandat 3225.420 kb on + strandat 3225.420 kb on + strandat 3225.420 kb on + strandat 3225.420 kb on + strandat 3225.420 kb on + strandat 3225.420 kb on + strandat 3225.420 kb on + strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.421 kb on - strandat 3225.556 kb on - strandat 3225.829 kb on + strand, within A4249_RS16000at 3225.829 kb on + strand, within A4249_RS16000at 3225.829 kb on + strand, within A4249_RS16000at 3225.829 kb on + strand, within A4249_RS16000at 3225.829 kb on + strand, within A4249_RS16000at 3225.830 kb on - strand, within A4249_RS16000at 3225.830 kb on - strand, within A4249_RS16000at 3225.830 kb on - strand, within A4249_RS16000at 3225.830 kb on - strand, within A4249_RS16000at 3226.023 kb on + strand, within A4249_RS16000at 3226.023 kb on + strand, within A4249_RS16000at 3226.023 kb on + strand, within A4249_RS16000at 3226.024 kb on - strand, within A4249_RS16000at 3226.024 kb on - strand, within A4249_RS16000at 3226.024 kb on - strand, within A4249_RS16000at 3226.084 kb on + strand, within A4249_RS16000at 3226.084 kb on + strand, within A4249_RS16000at 3226.084 kb on + strand, within A4249_RS16000at 3226.084 kb on + strand, within A4249_RS16000at 3226.084 kb on + strand, within A4249_RS16000at 3226.084 kb on + strand, within A4249_RS16000at 3226.084 kb on + strand, within A4249_RS16000at 3226.085 kb on - strand, within A4249_RS16000at 3226.085 kb on - strand, within A4249_RS16000at 3226.086 kb on + strand, within A4249_RS16000at 3226.086 kb on + strand, within A4249_RS16000at 3226.086 kb on + strand, within A4249_RS16000at 3226.086 kb on + strand, within A4249_RS16000at 3226.087 kb on - strand, within A4249_RS16000

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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3,224,456 + A4249_RS15990 0.21 +0.1
3,224,457 - A4249_RS15990 0.21 +0.4
3,224,457 - A4249_RS15990 0.21 +0.4
3,224,457 - A4249_RS15990 0.21 -0.8
3,224,514 - A4249_RS15990 0.31 +1.4
3,224,514 - A4249_RS15990 0.31 +0.0
3,224,514 - A4249_RS15990 0.31 -0.5
3,224,525 + A4249_RS15990 0.33 -0.6
3,224,526 - A4249_RS15990 0.33 +0.3
3,224,549 + A4249_RS15990 0.37 -0.1
3,224,549 + A4249_RS15990 0.37 +0.5
3,224,549 + A4249_RS15990 0.37 +0.1
3,224,549 + A4249_RS15990 0.37 -1.0
3,224,550 - A4249_RS15990 0.37 +0.4
3,224,550 - A4249_RS15990 0.37 +0.2
3,224,550 - A4249_RS15990 0.37 +0.7
3,224,550 - A4249_RS15990 0.37 -0.9
3,224,675 + A4249_RS15990 0.59 +0.7
3,224,675 + A4249_RS15990 0.59 +0.1
3,224,676 - A4249_RS15990 0.59 -0.0
3,224,676 - A4249_RS15990 0.59 +0.4
3,224,676 - A4249_RS15990 0.59 +0.5
3,224,676 - A4249_RS15990 0.59 +0.3
3,224,909 + -0.3
3,224,909 + -0.6
3,224,909 + -0.2
3,224,909 + -0.3
3,224,910 - +0.2
3,224,910 - +0.4
3,224,910 - -0.2
3,224,910 - +0.6
3,224,910 - -1.5
3,224,966 + A4249_RS15995 0.15 +0.8
3,224,966 + A4249_RS15995 0.15 +0.1
3,224,966 + A4249_RS15995 0.15 -0.3
3,224,966 + A4249_RS15995 0.15 -0.4
3,224,966 + A4249_RS15995 0.15 -0.7
3,224,966 + A4249_RS15995 0.15 -0.6
3,224,966 + A4249_RS15995 0.15 -0.1
3,224,966 + A4249_RS15995 0.15 +0.5
3,224,966 + A4249_RS15995 0.15 -0.0
3,224,966 + A4249_RS15995 0.15 +0.7
3,224,966 + A4249_RS15995 0.15 -0.9
3,224,966 + A4249_RS15995 0.15 -0.2
3,224,966 + A4249_RS15995 0.15 -0.2
3,224,967 - A4249_RS15995 0.15 -0.0
3,224,967 - A4249_RS15995 0.15 -0.1
3,224,967 - A4249_RS15995 0.15 -0.8
3,224,967 - A4249_RS15995 0.15 -0.4
3,224,967 - A4249_RS15995 0.15 -0.3
3,224,967 - A4249_RS15995 0.15 +0.3
3,224,967 - A4249_RS15995 0.15 -0.6
3,224,967 - A4249_RS15995 0.15 -1.9
3,224,967 - A4249_RS15995 0.15 -0.4
3,224,967 - A4249_RS15995 0.15 -0.2
3,224,967 - A4249_RS15995 0.15 -1.1
3,224,967 - A4249_RS15995 0.15 -2.0
3,224,967 - A4249_RS15995 0.15 +0.2
3,225,167 + A4249_RS15995 0.66 -0.1
3,225,167 + A4249_RS15995 0.66 +1.7
3,225,167 + A4249_RS15995 0.66 +0.2
3,225,168 - A4249_RS15995 0.67 +0.4
3,225,209 + A4249_RS15995 0.77 +0.6
3,225,209 + A4249_RS15995 0.77 +0.4
3,225,306 + -0.0
3,225,306 + +0.4
3,225,306 + -0.3
3,225,307 - +0.2
3,225,317 - -0.1
3,225,317 - -0.2
3,225,348 + +0.4
3,225,349 - -0.7
3,225,349 - -1.0
3,225,390 + +0.8
3,225,420 + +0.1
3,225,420 + +0.2
3,225,420 + +1.3
3,225,420 + +0.4
3,225,420 + -0.3
3,225,420 + +0.1
3,225,420 + +0.2
3,225,420 + -0.7
3,225,420 + -1.3
3,225,421 - -0.1
3,225,421 - +0.1
3,225,421 - +0.5
3,225,421 - +0.1
3,225,421 - -0.2
3,225,421 - +0.2
3,225,421 - -0.6
3,225,421 - -0.1
3,225,421 - +0.8
3,225,421 - +0.1
3,225,421 - -0.2
3,225,421 - +0.1
3,225,421 - +1.2
3,225,421 - -0.5
3,225,556 - +0.3
3,225,829 + A4249_RS16000 0.14 +0.7
3,225,829 + A4249_RS16000 0.14 +0.2
3,225,829 + A4249_RS16000 0.14 +0.1
3,225,829 + A4249_RS16000 0.14 -0.3
3,225,829 + A4249_RS16000 0.14 -0.1
3,225,830 - A4249_RS16000 0.14 +0.0
3,225,830 - A4249_RS16000 0.14 -0.2
3,225,830 - A4249_RS16000 0.14 -0.5
3,225,830 - A4249_RS16000 0.14 +0.7
3,226,023 + A4249_RS16000 0.21 +0.2
3,226,023 + A4249_RS16000 0.21 +1.5
3,226,023 + A4249_RS16000 0.21 -0.5
3,226,024 - A4249_RS16000 0.21 +0.1
3,226,024 - A4249_RS16000 0.21 +0.3
3,226,024 - A4249_RS16000 0.21 +1.0
3,226,084 + A4249_RS16000 0.23 +0.0
3,226,084 + A4249_RS16000 0.23 +0.6
3,226,084 + A4249_RS16000 0.23 +0.3
3,226,084 + A4249_RS16000 0.23 -0.2
3,226,084 + A4249_RS16000 0.23 +0.0
3,226,084 + A4249_RS16000 0.23 -0.1
3,226,084 + A4249_RS16000 0.23 +0.3
3,226,085 - A4249_RS16000 0.23 +0.1
3,226,085 - A4249_RS16000 0.23 -0.1
3,226,086 + A4249_RS16000 0.23 +0.6
3,226,086 + A4249_RS16000 0.23 +0.1
3,226,086 + A4249_RS16000 0.23 +0.5
3,226,086 + A4249_RS16000 0.23 -0.3
3,226,087 - A4249_RS16000 0.23 +0.4

Or see this region's nucleotide sequence