Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14570

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14560 and A4249_RS14565 are separated by 2 nucleotidesA4249_RS14565 and A4249_RS14570 are separated by 115 nucleotidesA4249_RS14570 and A4249_RS14575 are separated by 84 nucleotides A4249_RS14560: A4249_RS14560 - M1 family metallopeptidase, at 2,948,211 to 2,950,163 _RS14560 A4249_RS14565: A4249_RS14565 - DUF488 domain-containing protein, at 2,950,166 to 2,950,597 _RS14565 A4249_RS14570: A4249_RS14570 - complex I NDUFA9 subunit family protein, at 2,950,713 to 2,951,690 _RS14570 A4249_RS14575: A4249_RS14575 - DNA helicase RecQ, at 2,951,775 to 2,953,652 _RS14575 Position (kb) 2950 2951 2952Strain fitness (log2 ratio) -2 -1 0 1at 2949.966 kb on + strand, within A4249_RS14560at 2950.092 kb on + strandat 2950.092 kb on + strandat 2950.093 kb on - strandat 2950.093 kb on - strandat 2950.093 kb on - strandat 2950.093 kb on - strandat 2950.113 kb on + strandat 2950.113 kb on + strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.114 kb on - strandat 2950.425 kb on + strand, within A4249_RS14565at 2950.425 kb on + strand, within A4249_RS14565at 2950.425 kb on + strand, within A4249_RS14565at 2950.425 kb on + strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.426 kb on - strand, within A4249_RS14565at 2950.575 kb on + strandat 2950.676 kb on + strandat 2951.109 kb on + strand, within A4249_RS14570at 2951.109 kb on + strand, within A4249_RS14570at 2951.110 kb on - strand, within A4249_RS14570at 2951.110 kb on - strand, within A4249_RS14570at 2951.110 kb on - strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.292 kb on + strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.293 kb on - strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.358 kb on + strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.359 kb on - strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.382 kb on + strand, within A4249_RS14570at 2951.383 kb on - strand, within A4249_RS14570at 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.637 kb on + strandat 2951.638 kb on - strandat 2951.638 kb on - strandat 2951.638 kb on - strandat 2951.688 kb on + strandat 2951.688 kb on + strandat 2951.688 kb on + strandat 2951.689 kb on - strandat 2951.689 kb on - strandat 2951.701 kb on + strandat 2951.702 kb on - strandat 2951.702 kb on - strandat 2951.702 kb on - strandat 2951.770 kb on + strandat 2951.771 kb on - strandat 2951.811 kb on - strandat 2951.961 kb on + strandat 2951.961 kb on + strandat 2951.962 kb on - strandat 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.150 kb on + strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.151 kb on - strand, within A4249_RS14575at 2952.531 kb on + strand, within A4249_RS14575at 2952.531 kb on + strand, within A4249_RS14575at 2952.532 kb on - strand, within A4249_RS14575at 2952.532 kb on - strand, within A4249_RS14575at 2952.532 kb on - strand, within A4249_RS14575at 2952.603 kb on + strand, within A4249_RS14575

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,949,966 + A4249_RS14560 0.90 +0.1
2,950,092 + +0.2
2,950,092 + +0.1
2,950,093 - +0.1
2,950,093 - -0.5
2,950,093 - +0.3
2,950,093 - +0.4
2,950,113 + -0.9
2,950,113 + -0.0
2,950,114 - +0.1
2,950,114 - +0.8
2,950,114 - -0.2
2,950,114 - -0.5
2,950,114 - -0.8
2,950,114 - -2.1
2,950,425 + A4249_RS14565 0.60 +0.2
2,950,425 + A4249_RS14565 0.60 -1.5
2,950,425 + A4249_RS14565 0.60 +0.5
2,950,425 + A4249_RS14565 0.60 +0.1
2,950,426 - A4249_RS14565 0.60 +1.6
2,950,426 - A4249_RS14565 0.60 +0.1
2,950,426 - A4249_RS14565 0.60 +0.1
2,950,426 - A4249_RS14565 0.60 -0.0
2,950,426 - A4249_RS14565 0.60 -1.7
2,950,426 - A4249_RS14565 0.60 -0.1
2,950,426 - A4249_RS14565 0.60 +0.1
2,950,575 + +0.0
2,950,676 + -0.6
2,951,109 + A4249_RS14570 0.40 -0.8
2,951,109 + A4249_RS14570 0.40 +0.3
2,951,110 - A4249_RS14570 0.41 +0.0
2,951,110 - A4249_RS14570 0.41 +0.0
2,951,110 - A4249_RS14570 0.41 -0.1
2,951,292 + A4249_RS14570 0.59 -0.4
2,951,292 + A4249_RS14570 0.59 -0.1
2,951,292 + A4249_RS14570 0.59 -0.0
2,951,292 + A4249_RS14570 0.59 -1.0
2,951,292 + A4249_RS14570 0.59 -0.0
2,951,292 + A4249_RS14570 0.59 -0.0
2,951,292 + A4249_RS14570 0.59 -0.1
2,951,292 + A4249_RS14570 0.59 +0.8
2,951,292 + A4249_RS14570 0.59 -0.9
2,951,293 - A4249_RS14570 0.59 +0.1
2,951,293 - A4249_RS14570 0.59 +0.1
2,951,293 - A4249_RS14570 0.59 -0.1
2,951,293 - A4249_RS14570 0.59 -0.0
2,951,293 - A4249_RS14570 0.59 +0.3
2,951,293 - A4249_RS14570 0.59 -0.2
2,951,358 + A4249_RS14570 0.66 -0.6
2,951,358 + A4249_RS14570 0.66 +0.3
2,951,358 + A4249_RS14570 0.66 -0.4
2,951,358 + A4249_RS14570 0.66 +0.3
2,951,358 + A4249_RS14570 0.66 +0.3
2,951,358 + A4249_RS14570 0.66 -0.3
2,951,359 - A4249_RS14570 0.66 -0.6
2,951,359 - A4249_RS14570 0.66 +0.9
2,951,359 - A4249_RS14570 0.66 -0.1
2,951,359 - A4249_RS14570 0.66 -0.0
2,951,359 - A4249_RS14570 0.66 +1.1
2,951,359 - A4249_RS14570 0.66 -0.7
2,951,359 - A4249_RS14570 0.66 +0.3
2,951,382 + A4249_RS14570 0.68 -0.2
2,951,382 + A4249_RS14570 0.68 -0.1
2,951,382 + A4249_RS14570 0.68 -0.4
2,951,382 + A4249_RS14570 0.68 +0.3
2,951,382 + A4249_RS14570 0.68 -0.5
2,951,382 + A4249_RS14570 0.68 -0.2
2,951,382 + A4249_RS14570 0.68 -0.4
2,951,382 + A4249_RS14570 0.68 -0.7
2,951,382 + A4249_RS14570 0.68 +0.1
2,951,382 + A4249_RS14570 0.68 -0.0
2,951,383 - A4249_RS14570 0.69 +0.1
2,951,637 + +0.5
2,951,637 + -0.4
2,951,637 + +0.3
2,951,637 + +0.0
2,951,637 + -0.3
2,951,637 + -0.4
2,951,637 + -0.1
2,951,637 + +0.2
2,951,638 - -0.5
2,951,638 - -0.1
2,951,638 - +0.3
2,951,688 + +1.4
2,951,688 + -0.1
2,951,688 + -0.9
2,951,689 - -0.9
2,951,689 - +0.5
2,951,701 + -0.0
2,951,702 - -0.3
2,951,702 - +0.6
2,951,702 - -2.0
2,951,770 + +0.3
2,951,771 - +0.1
2,951,811 - +0.4
2,951,961 + -0.1
2,951,961 + +0.3
2,951,962 - +0.1
2,952,150 + A4249_RS14575 0.20 -0.7
2,952,150 + A4249_RS14575 0.20 +0.4
2,952,150 + A4249_RS14575 0.20 +0.6
2,952,150 + A4249_RS14575 0.20 +0.5
2,952,150 + A4249_RS14575 0.20 +0.9
2,952,150 + A4249_RS14575 0.20 -0.5
2,952,150 + A4249_RS14575 0.20 -0.4
2,952,150 + A4249_RS14575 0.20 +0.1
2,952,150 + A4249_RS14575 0.20 -0.5
2,952,150 + A4249_RS14575 0.20 +0.3
2,952,150 + A4249_RS14575 0.20 -0.3
2,952,151 - A4249_RS14575 0.20 -0.1
2,952,151 - A4249_RS14575 0.20 +0.2
2,952,151 - A4249_RS14575 0.20 -0.4
2,952,151 - A4249_RS14575 0.20 +0.3
2,952,151 - A4249_RS14575 0.20 -0.2
2,952,151 - A4249_RS14575 0.20 -0.5
2,952,151 - A4249_RS14575 0.20 -0.1
2,952,151 - A4249_RS14575 0.20 -0.6
2,952,151 - A4249_RS14575 0.20 +0.3
2,952,151 - A4249_RS14575 0.20 +0.4
2,952,151 - A4249_RS14575 0.20 -0.4
2,952,151 - A4249_RS14575 0.20 +0.3
2,952,531 + A4249_RS14575 0.40 -0.0
2,952,531 + A4249_RS14575 0.40 +0.1
2,952,532 - A4249_RS14575 0.40 +0.5
2,952,532 - A4249_RS14575 0.40 -0.3
2,952,532 - A4249_RS14575 0.40 -0.4
2,952,603 + A4249_RS14575 0.44 -0.3

Or see this region's nucleotide sequence