Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12860

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12855 and A4249_RS12860 are separated by 12 nucleotidesA4249_RS12860 and A4249_RS12865 are separated by 111 nucleotides A4249_RS12855: A4249_RS12855 - serine protease, at 2,580,917 to 2,581,750 _RS12855 A4249_RS12860: A4249_RS12860 - DUF350 domain-containing protein, at 2,581,763 to 2,582,203 _RS12860 A4249_RS12865: A4249_RS12865 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,582,315 to 2,583,475 _RS12865 Position (kb) 2581 2582 2583Strain fitness (log2 ratio) -2 -1 0 1at 2580.984 kb on + strandat 2580.984 kb on + strandat 2580.984 kb on + strandat 2580.985 kb on - strandat 2580.985 kb on - strandat 2580.985 kb on - strandat 2581.075 kb on + strand, within A4249_RS12855at 2581.076 kb on - strand, within A4249_RS12855at 2581.076 kb on - strand, within A4249_RS12855at 2581.076 kb on - strand, within A4249_RS12855at 2581.076 kb on - strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.077 kb on + strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.078 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.608 kb on - strand, within A4249_RS12855at 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.716 kb on + strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.717 kb on - strandat 2581.807 kb on + strand, within A4249_RS12860at 2582.079 kb on + strand, within A4249_RS12860at 2582.079 kb on + strand, within A4249_RS12860at 2582.080 kb on - strand, within A4249_RS12860at 2582.080 kb on - strand, within A4249_RS12860at 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.269 kb on + strandat 2582.270 kb on - strandat 2582.270 kb on - strandat 2582.270 kb on - strandat 2582.270 kb on - strandat 2582.270 kb on - strandat 2582.338 kb on + strandat 2582.338 kb on + strandat 2582.339 kb on - strandat 2582.436 kb on + strand, within A4249_RS12865at 2582.437 kb on - strand, within A4249_RS12865at 2582.497 kb on - strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.616 kb on + strand, within A4249_RS12865at 2582.617 kb on - strand, within A4249_RS12865at 2582.617 kb on - strand, within A4249_RS12865at 2582.617 kb on - strand, within A4249_RS12865at 2582.655 kb on + strand, within A4249_RS12865at 2582.656 kb on - strand, within A4249_RS12865at 2582.691 kb on + strand, within A4249_RS12865at 2582.691 kb on + strand, within A4249_RS12865at 2582.692 kb on - strand, within A4249_RS12865at 2582.898 kb on + strand, within A4249_RS12865at 2582.898 kb on + strand, within A4249_RS12865at 2582.898 kb on + strand, within A4249_RS12865at 2582.899 kb on - strand, within A4249_RS12865at 2582.899 kb on - strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.127 kb on + strand, within A4249_RS12865at 2583.128 kb on - strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.129 kb on + strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865at 2583.130 kb on - strand, within A4249_RS12865

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,580,984 + +1.4
2,580,984 + -0.2
2,580,984 + -0.8
2,580,985 - +0.8
2,580,985 - +1.1
2,580,985 - +0.8
2,581,075 + A4249_RS12855 0.19 +0.9
2,581,076 - A4249_RS12855 0.19 -0.6
2,581,076 - A4249_RS12855 0.19 -0.6
2,581,076 - A4249_RS12855 0.19 -0.7
2,581,076 - A4249_RS12855 0.19 -0.3
2,581,077 + A4249_RS12855 0.19 +1.1
2,581,077 + A4249_RS12855 0.19 -0.5
2,581,077 + A4249_RS12855 0.19 -0.0
2,581,077 + A4249_RS12855 0.19 -0.0
2,581,077 + A4249_RS12855 0.19 +1.6
2,581,077 + A4249_RS12855 0.19 -2.6
2,581,077 + A4249_RS12855 0.19 +0.4
2,581,078 - A4249_RS12855 0.19 -0.1
2,581,078 - A4249_RS12855 0.19 +0.6
2,581,078 - A4249_RS12855 0.19 -1.3
2,581,078 - A4249_RS12855 0.19 -1.5
2,581,078 - A4249_RS12855 0.19 +0.1
2,581,078 - A4249_RS12855 0.19 -0.5
2,581,078 - A4249_RS12855 0.19 +1.2
2,581,078 - A4249_RS12855 0.19 +0.2
2,581,078 - A4249_RS12855 0.19 +0.3
2,581,608 - A4249_RS12855 0.83 +0.4
2,581,608 - A4249_RS12855 0.83 -0.4
2,581,608 - A4249_RS12855 0.83 +0.4
2,581,608 - A4249_RS12855 0.83 -0.5
2,581,608 - A4249_RS12855 0.83 -0.6
2,581,608 - A4249_RS12855 0.83 -0.5
2,581,608 - A4249_RS12855 0.83 -0.8
2,581,716 + -0.8
2,581,716 + -0.4
2,581,716 + +0.9
2,581,716 + -1.4
2,581,716 + -0.4
2,581,716 + -0.0
2,581,717 - -0.9
2,581,717 - -0.1
2,581,717 - -0.3
2,581,717 - +0.1
2,581,717 - -0.0
2,581,717 - +0.3
2,581,717 - -0.7
2,581,717 - -0.1
2,581,717 - -0.5
2,581,717 - -0.2
2,581,717 - -0.7
2,581,717 - -1.9
2,581,807 + A4249_RS12860 0.10 -0.5
2,582,079 + A4249_RS12860 0.72 +0.7
2,582,079 + A4249_RS12860 0.72 -1.4
2,582,080 - A4249_RS12860 0.72 +0.6
2,582,080 - A4249_RS12860 0.72 +0.1
2,582,269 + -0.1
2,582,269 + -0.2
2,582,269 + +0.8
2,582,269 + +0.3
2,582,269 + -1.4
2,582,269 + +0.3
2,582,269 + -1.5
2,582,269 + +0.4
2,582,269 + -0.2
2,582,269 + +0.5
2,582,270 - -1.4
2,582,270 - +0.1
2,582,270 - +0.6
2,582,270 - +0.4
2,582,270 - -0.5
2,582,338 + +0.2
2,582,338 + +0.4
2,582,339 - -0.4
2,582,436 + A4249_RS12865 0.10 +1.6
2,582,437 - A4249_RS12865 0.11 +0.7
2,582,497 - A4249_RS12865 0.16 +0.1
2,582,616 + A4249_RS12865 0.26 -0.2
2,582,616 + A4249_RS12865 0.26 +0.6
2,582,616 + A4249_RS12865 0.26 -0.1
2,582,616 + A4249_RS12865 0.26 +0.8
2,582,616 + A4249_RS12865 0.26 -0.2
2,582,616 + A4249_RS12865 0.26 +0.1
2,582,616 + A4249_RS12865 0.26 -0.6
2,582,616 + A4249_RS12865 0.26 -0.9
2,582,616 + A4249_RS12865 0.26 +0.1
2,582,617 - A4249_RS12865 0.26 -0.4
2,582,617 - A4249_RS12865 0.26 +0.6
2,582,617 - A4249_RS12865 0.26 +0.3
2,582,655 + A4249_RS12865 0.29 +0.1
2,582,656 - A4249_RS12865 0.29 -0.1
2,582,691 + A4249_RS12865 0.32 -0.8
2,582,691 + A4249_RS12865 0.32 +0.2
2,582,692 - A4249_RS12865 0.32 -0.2
2,582,898 + A4249_RS12865 0.50 +0.8
2,582,898 + A4249_RS12865 0.50 +0.7
2,582,898 + A4249_RS12865 0.50 -0.5
2,582,899 - A4249_RS12865 0.50 -1.4
2,582,899 - A4249_RS12865 0.50 -0.0
2,583,127 + A4249_RS12865 0.70 +0.1
2,583,127 + A4249_RS12865 0.70 -0.2
2,583,127 + A4249_RS12865 0.70 +1.2
2,583,127 + A4249_RS12865 0.70 +0.1
2,583,127 + A4249_RS12865 0.70 -0.2
2,583,128 - A4249_RS12865 0.70 -0.9
2,583,129 + A4249_RS12865 0.70 -0.2
2,583,129 + A4249_RS12865 0.70 -0.2
2,583,129 + A4249_RS12865 0.70 -0.5
2,583,129 + A4249_RS12865 0.70 +0.1
2,583,129 + A4249_RS12865 0.70 +0.4
2,583,129 + A4249_RS12865 0.70 +0.6
2,583,129 + A4249_RS12865 0.70 -0.5
2,583,129 + A4249_RS12865 0.70 -0.2
2,583,129 + A4249_RS12865 0.70 -0.9
2,583,129 + A4249_RS12865 0.70 +0.0
2,583,129 + A4249_RS12865 0.70 +0.4
2,583,129 + A4249_RS12865 0.70 -0.7
2,583,130 - A4249_RS12865 0.70 -0.4
2,583,130 - A4249_RS12865 0.70 -0.3
2,583,130 - A4249_RS12865 0.70 +0.4
2,583,130 - A4249_RS12865 0.70 -1.2
2,583,130 - A4249_RS12865 0.70 +0.3
2,583,130 - A4249_RS12865 0.70 +0.8
2,583,130 - A4249_RS12865 0.70 -0.1
2,583,130 - A4249_RS12865 0.70 -0.0
2,583,130 - A4249_RS12865 0.70 +0.9
2,583,130 - A4249_RS12865 0.70 +0.4
2,583,130 - A4249_RS12865 0.70 +0.3
2,583,130 - A4249_RS12865 0.70 +0.8
2,583,130 - A4249_RS12865 0.70 -1.3

Or see this region's nucleotide sequence