Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12260

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12245 and A4249_RS12250 are separated by 273 nucleotidesA4249_RS12250 and A4249_RS12255 are separated by 163 nucleotidesA4249_RS12255 and A4249_RS12260 are separated by 104 nucleotidesA4249_RS12260 and A4249_RS12265 overlap by 4 nucleotidesA4249_RS12265 and A4249_RS12270 are separated by 57 nucleotides A4249_RS12245: A4249_RS12245 - methyltransferase domain-containing protein, at 2,458,050 to 2,459,234 _RS12245 A4249_RS12250: A4249_RS12250 - tRNA-Ala, at 2,459,508 to 2,459,583 _RS12250 A4249_RS12255: A4249_RS12255 - YggT family protein, at 2,459,747 to 2,460,052 _RS12255 A4249_RS12260: A4249_RS12260 - 3-hydroxybutyryl-CoA dehydrogenase, at 2,460,157 to 2,461,038 _RS12260 A4249_RS12265: A4249_RS12265 - phthalate transporter, at 2,461,035 to 2,461,592 _RS12265 A4249_RS12270: A4249_RS12270 - DUF418 domain-containing protein, at 2,461,650 to 2,462,894 _RS12270 Position (kb) 2460 2461 2462Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2459.177 kb on + strandat 2459.177 kb on + strandat 2459.177 kb on + strandat 2459.177 kb on + strandat 2459.177 kb on + strandat 2459.177 kb on + strandat 2459.178 kb on - strandat 2459.178 kb on - strandat 2459.178 kb on - strandat 2459.178 kb on - strandat 2459.178 kb on - strandat 2459.178 kb on - strandat 2459.178 kb on - strandat 2459.269 kb on + strandat 2459.269 kb on + strandat 2459.269 kb on + strandat 2459.270 kb on - strandat 2459.270 kb on - strandat 2459.270 kb on - strandat 2459.270 kb on - strandat 2459.270 kb on - strandat 2459.272 kb on + strandat 2459.272 kb on + strandat 2459.272 kb on + strandat 2459.272 kb on + strandat 2459.272 kb on + strandat 2459.272 kb on + strandat 2459.272 kb on + strandat 2459.273 kb on - strandat 2459.273 kb on - strandat 2459.273 kb on - strandat 2459.273 kb on - strandat 2459.273 kb on - strandat 2459.273 kb on - strandat 2459.273 kb on - strandat 2459.381 kb on + strandat 2459.381 kb on + strandat 2459.449 kb on - strandat 2459.624 kb on + strandat 2459.624 kb on + strandat 2459.624 kb on + strandat 2459.624 kb on + strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.625 kb on - strandat 2459.682 kb on + strandat 2460.121 kb on + strandat 2460.122 kb on - strandat 2460.463 kb on + strand, within A4249_RS12260at 2460.463 kb on + strand, within A4249_RS12260at 2460.463 kb on + strand, within A4249_RS12260at 2460.464 kb on - strand, within A4249_RS12260at 2460.464 kb on - strand, within A4249_RS12260at 2460.696 kb on + strand, within A4249_RS12260at 2460.735 kb on + strand, within A4249_RS12260at 2460.735 kb on + strand, within A4249_RS12260at 2460.736 kb on - strand, within A4249_RS12260at 2460.904 kb on + strand, within A4249_RS12260at 2461.006 kb on + strandat 2461.700 kb on - strandat 2461.803 kb on + strand, within A4249_RS12270at 2461.803 kb on + strand, within A4249_RS12270at 2461.803 kb on + strand, within A4249_RS12270at 2461.803 kb on + strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.804 kb on - strand, within A4249_RS12270at 2461.929 kb on + strand, within A4249_RS12270at 2461.929 kb on + strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2461.930 kb on - strand, within A4249_RS12270at 2462.034 kb on + strand, within A4249_RS12270at 2462.035 kb on - strand, within A4249_RS12270

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,459,177 + +1.6
2,459,177 + +0.4
2,459,177 + +1.1
2,459,177 + -0.2
2,459,177 + +0.4
2,459,177 + +0.9
2,459,178 - +0.7
2,459,178 - -0.2
2,459,178 - -0.0
2,459,178 - +0.2
2,459,178 - -0.1
2,459,178 - +0.2
2,459,178 - +1.2
2,459,269 + +0.1
2,459,269 + -0.6
2,459,269 + +0.6
2,459,270 - -0.2
2,459,270 - -0.6
2,459,270 - +0.1
2,459,270 - -0.4
2,459,270 - -1.1
2,459,272 + -0.9
2,459,272 + +0.2
2,459,272 + -0.5
2,459,272 + +0.7
2,459,272 + -1.7
2,459,272 + +0.3
2,459,272 + -0.7
2,459,273 - +0.1
2,459,273 - -2.1
2,459,273 - -0.9
2,459,273 - +0.9
2,459,273 - +0.8
2,459,273 - -0.2
2,459,273 - +1.1
2,459,381 + -0.2
2,459,381 + +0.2
2,459,449 - -0.4
2,459,624 + -0.6
2,459,624 + -0.5
2,459,624 + -0.7
2,459,624 + +0.4
2,459,625 - -0.5
2,459,625 - -0.2
2,459,625 - -0.3
2,459,625 - -0.5
2,459,625 - -0.1
2,459,625 - +0.4
2,459,625 - -0.7
2,459,625 - +0.2
2,459,625 - -0.3
2,459,625 - -0.1
2,459,625 - -0.7
2,459,625 - -1.4
2,459,682 + +0.7
2,460,121 + +0.8
2,460,122 - -1.4
2,460,463 + A4249_RS12260 0.35 -0.2
2,460,463 + A4249_RS12260 0.35 +0.6
2,460,463 + A4249_RS12260 0.35 +0.4
2,460,464 - A4249_RS12260 0.35 +0.1
2,460,464 - A4249_RS12260 0.35 -0.1
2,460,696 + A4249_RS12260 0.61 -1.4
2,460,735 + A4249_RS12260 0.66 -0.4
2,460,735 + A4249_RS12260 0.66 +0.1
2,460,736 - A4249_RS12260 0.66 -0.7
2,460,904 + A4249_RS12260 0.85 +0.6
2,461,006 + +3.4
2,461,700 - +0.6
2,461,803 + A4249_RS12270 0.12 -0.1
2,461,803 + A4249_RS12270 0.12 +0.1
2,461,803 + A4249_RS12270 0.12 -0.6
2,461,803 + A4249_RS12270 0.12 +0.8
2,461,804 - A4249_RS12270 0.12 -0.2
2,461,804 - A4249_RS12270 0.12 +0.1
2,461,804 - A4249_RS12270 0.12 +0.4
2,461,804 - A4249_RS12270 0.12 +0.2
2,461,804 - A4249_RS12270 0.12 -0.3
2,461,929 + A4249_RS12270 0.22 +0.6
2,461,929 + A4249_RS12270 0.22 -0.4
2,461,930 - A4249_RS12270 0.22 -0.3
2,461,930 - A4249_RS12270 0.22 -0.3
2,461,930 - A4249_RS12270 0.22 -0.2
2,461,930 - A4249_RS12270 0.22 -0.0
2,461,930 - A4249_RS12270 0.22 -0.1
2,462,034 + A4249_RS12270 0.31 +0.2
2,462,035 - A4249_RS12270 0.31 -0.7

Or see this region's nucleotide sequence