Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12025 and A4249_RS12030 are separated by 118 nucleotides A4249_RS12030 and A4249_RS12035 are separated by 100 nucleotides A4249_RS12035 and A4249_RS12040 are separated by 237 nucleotides
A4249_RS12025: A4249_RS12025 - Flp pilus assembly protein CpaB, at 2,415,762 to 2,416,679
_RS12025
A4249_RS12030: A4249_RS12030 - prepilin peptidase, at 2,416,798 to 2,417,316
_RS12030
A4249_RS12035: A4249_RS12035 - Flp family type IVb pilin, at 2,417,417 to 2,417,593
_RS12035
A4249_RS12040: A4249_RS12040 - pilus assembly protein N-terminal domain-containing protein, at 2,417,831 to 2,418,256
_RS12040
Position (kb)
2416
2417
2418 Strain fitness (log2 ratio)
-2
-1
0
1 at 2415.799 kb on + strand at 2415.799 kb on + strand at 2415.799 kb on + strand at 2415.799 kb on + strand at 2415.799 kb on + strand at 2415.799 kb on + strand at 2415.800 kb on - strand at 2415.800 kb on - strand at 2415.877 kb on + strand, within A4249_RS12025 at 2415.877 kb on + strand, within A4249_RS12025 at 2415.878 kb on - strand, within A4249_RS12025 at 2415.878 kb on - strand, within A4249_RS12025 at 2415.878 kb on - strand, within A4249_RS12025 at 2415.878 kb on - strand, within A4249_RS12025 at 2416.142 kb on + strand, within A4249_RS12025 at 2416.142 kb on + strand, within A4249_RS12025 at 2416.207 kb on + strand, within A4249_RS12025 at 2416.207 kb on + strand, within A4249_RS12025 at 2416.208 kb on - strand, within A4249_RS12025 at 2416.208 kb on - strand, within A4249_RS12025 at 2416.208 kb on - strand, within A4249_RS12025 at 2416.220 kb on - strand, within A4249_RS12025 at 2416.303 kb on + strand, within A4249_RS12025 at 2416.304 kb on - strand, within A4249_RS12025 at 2416.768 kb on + strand at 2416.769 kb on - strand at 2417.006 kb on + strand, within A4249_RS12030 at 2417.006 kb on + strand, within A4249_RS12030 at 2417.006 kb on + strand, within A4249_RS12030 at 2417.007 kb on - strand, within A4249_RS12030 at 2417.007 kb on - strand, within A4249_RS12030 at 2417.007 kb on - strand, within A4249_RS12030 at 2417.149 kb on - strand, within A4249_RS12030 at 2417.149 kb on - strand, within A4249_RS12030 at 2417.149 kb on - strand, within A4249_RS12030 at 2417.245 kb on + strand, within A4249_RS12030 at 2417.245 kb on + strand, within A4249_RS12030 at 2417.245 kb on + strand, within A4249_RS12030 at 2417.245 kb on + strand, within A4249_RS12030 at 2417.245 kb on + strand, within A4249_RS12030 at 2417.245 kb on + strand, within A4249_RS12030 at 2417.245 kb on + strand, within A4249_RS12030 at 2417.245 kb on + strand, within A4249_RS12030 at 2417.246 kb on - strand, within A4249_RS12030 at 2417.246 kb on - strand, within A4249_RS12030 at 2417.310 kb on + strand at 2417.310 kb on + strand at 2417.311 kb on - strand at 2417.343 kb on - strand at 2417.408 kb on - strand at 2417.418 kb on + strand at 2417.419 kb on - strand at 2417.431 kb on + strand at 2417.431 kb on + strand at 2417.434 kb on + strand at 2417.597 kb on + strand at 2417.598 kb on - strand at 2417.747 kb on + strand at 2417.747 kb on + strand at 2417.748 kb on - strand at 2417.748 kb on - strand at 2417.786 kb on + strand at 2417.786 kb on + strand at 2417.786 kb on + strand at 2417.786 kb on + strand at 2417.787 kb on - strand at 2417.787 kb on - strand at 2417.816 kb on + strand at 2417.816 kb on + strand at 2417.816 kb on + strand at 2417.816 kb on + strand at 2418.133 kb on + strand, within A4249_RS12040 at 2418.134 kb on - strand, within A4249_RS12040
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 2,415,799 + -0.4 2,415,799 + -1.6 2,415,799 + -0.7 2,415,799 + +0.5 2,415,799 + +0.4 2,415,799 + +0.4 2,415,800 - -0.1 2,415,800 - -0.1 2,415,877 + A4249_RS12025 0.13 +0.6 2,415,877 + A4249_RS12025 0.13 +1.0 2,415,878 - A4249_RS12025 0.13 +0.3 2,415,878 - A4249_RS12025 0.13 -0.4 2,415,878 - A4249_RS12025 0.13 -0.7 2,415,878 - A4249_RS12025 0.13 -0.0 2,416,142 + A4249_RS12025 0.41 -0.8 2,416,142 + A4249_RS12025 0.41 +0.6 2,416,207 + A4249_RS12025 0.48 +1.3 2,416,207 + A4249_RS12025 0.48 +0.3 2,416,208 - A4249_RS12025 0.49 -0.2 2,416,208 - A4249_RS12025 0.49 +0.8 2,416,208 - A4249_RS12025 0.49 -0.4 2,416,220 - A4249_RS12025 0.50 -0.8 2,416,303 + A4249_RS12025 0.59 -0.0 2,416,304 - A4249_RS12025 0.59 -0.5 2,416,768 + +0.6 2,416,769 - +0.0 2,417,006 + A4249_RS12030 0.40 -0.5 2,417,006 + A4249_RS12030 0.40 -0.6 2,417,006 + A4249_RS12030 0.40 -0.8 2,417,007 - A4249_RS12030 0.40 -0.2 2,417,007 - A4249_RS12030 0.40 -1.1 2,417,007 - A4249_RS12030 0.40 +0.6 2,417,149 - A4249_RS12030 0.68 +0.4 2,417,149 - A4249_RS12030 0.68 -0.4 2,417,149 - A4249_RS12030 0.68 +0.1 2,417,245 + A4249_RS12030 0.86 -0.8 2,417,245 + A4249_RS12030 0.86 -1.1 2,417,245 + A4249_RS12030 0.86 -0.6 2,417,245 + A4249_RS12030 0.86 -0.3 2,417,245 + A4249_RS12030 0.86 -0.9 2,417,245 + A4249_RS12030 0.86 +0.5 2,417,245 + A4249_RS12030 0.86 -0.7 2,417,245 + A4249_RS12030 0.86 +0.3 2,417,246 - A4249_RS12030 0.86 -0.1 2,417,246 - A4249_RS12030 0.86 -0.7 2,417,310 + -0.6 2,417,310 + -0.7 2,417,311 - -0.7 2,417,343 - +0.2 2,417,408 - -0.5 2,417,418 + +0.2 2,417,419 - -0.2 2,417,431 + -2.2 2,417,431 + +0.1 2,417,434 + +0.6 2,417,597 + +0.0 2,417,598 - +0.9 2,417,747 + -0.5 2,417,747 + +0.5 2,417,748 - -0.3 2,417,748 - +0.2 2,417,786 + +0.1 2,417,786 + -0.6 2,417,786 + -2.2 2,417,786 + -0.2 2,417,787 - +0.8 2,417,787 - +0.3 2,417,816 + -0.2 2,417,816 + -0.7 2,417,816 + -0.1 2,417,816 + -0.6 2,418,133 + A4249_RS12040 0.71 +0.5 2,418,134 - A4249_RS12040 0.71 +1.4
Or see this region's nucleotide sequence