Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12030

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12025 and A4249_RS12030 are separated by 118 nucleotidesA4249_RS12030 and A4249_RS12035 are separated by 100 nucleotidesA4249_RS12035 and A4249_RS12040 are separated by 237 nucleotides A4249_RS12025: A4249_RS12025 - Flp pilus assembly protein CpaB, at 2,415,762 to 2,416,679 _RS12025 A4249_RS12030: A4249_RS12030 - prepilin peptidase, at 2,416,798 to 2,417,316 _RS12030 A4249_RS12035: A4249_RS12035 - Flp family type IVb pilin, at 2,417,417 to 2,417,593 _RS12035 A4249_RS12040: A4249_RS12040 - pilus assembly protein N-terminal domain-containing protein, at 2,417,831 to 2,418,256 _RS12040 Position (kb) 2416 2417 2418Strain fitness (log2 ratio) -2 -1 0 1at 2415.799 kb on + strandat 2415.799 kb on + strandat 2415.799 kb on + strandat 2415.799 kb on + strandat 2415.799 kb on + strandat 2415.799 kb on + strandat 2415.800 kb on - strandat 2415.800 kb on - strandat 2415.877 kb on + strand, within A4249_RS12025at 2415.877 kb on + strand, within A4249_RS12025at 2415.878 kb on - strand, within A4249_RS12025at 2415.878 kb on - strand, within A4249_RS12025at 2415.878 kb on - strand, within A4249_RS12025at 2415.878 kb on - strand, within A4249_RS12025at 2416.142 kb on + strand, within A4249_RS12025at 2416.142 kb on + strand, within A4249_RS12025at 2416.207 kb on + strand, within A4249_RS12025at 2416.207 kb on + strand, within A4249_RS12025at 2416.208 kb on - strand, within A4249_RS12025at 2416.208 kb on - strand, within A4249_RS12025at 2416.208 kb on - strand, within A4249_RS12025at 2416.220 kb on - strand, within A4249_RS12025at 2416.303 kb on + strand, within A4249_RS12025at 2416.304 kb on - strand, within A4249_RS12025at 2416.768 kb on + strandat 2416.769 kb on - strandat 2417.006 kb on + strand, within A4249_RS12030at 2417.006 kb on + strand, within A4249_RS12030at 2417.006 kb on + strand, within A4249_RS12030at 2417.007 kb on - strand, within A4249_RS12030at 2417.007 kb on - strand, within A4249_RS12030at 2417.007 kb on - strand, within A4249_RS12030at 2417.149 kb on - strand, within A4249_RS12030at 2417.149 kb on - strand, within A4249_RS12030at 2417.149 kb on - strand, within A4249_RS12030at 2417.245 kb on + strand, within A4249_RS12030at 2417.245 kb on + strand, within A4249_RS12030at 2417.245 kb on + strand, within A4249_RS12030at 2417.245 kb on + strand, within A4249_RS12030at 2417.245 kb on + strand, within A4249_RS12030at 2417.245 kb on + strand, within A4249_RS12030at 2417.245 kb on + strand, within A4249_RS12030at 2417.245 kb on + strand, within A4249_RS12030at 2417.246 kb on - strand, within A4249_RS12030at 2417.246 kb on - strand, within A4249_RS12030at 2417.310 kb on + strandat 2417.310 kb on + strandat 2417.311 kb on - strandat 2417.343 kb on - strandat 2417.408 kb on - strandat 2417.418 kb on + strandat 2417.419 kb on - strandat 2417.431 kb on + strandat 2417.431 kb on + strandat 2417.434 kb on + strandat 2417.597 kb on + strandat 2417.598 kb on - strandat 2417.747 kb on + strandat 2417.747 kb on + strandat 2417.748 kb on - strandat 2417.748 kb on - strandat 2417.786 kb on + strandat 2417.786 kb on + strandat 2417.786 kb on + strandat 2417.786 kb on + strandat 2417.787 kb on - strandat 2417.787 kb on - strandat 2417.816 kb on + strandat 2417.816 kb on + strandat 2417.816 kb on + strandat 2417.816 kb on + strandat 2418.133 kb on + strand, within A4249_RS12040at 2418.134 kb on - strand, within A4249_RS12040

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,415,799 + -0.4
2,415,799 + -1.6
2,415,799 + -0.7
2,415,799 + +0.5
2,415,799 + +0.4
2,415,799 + +0.4
2,415,800 - -0.1
2,415,800 - -0.1
2,415,877 + A4249_RS12025 0.13 +0.6
2,415,877 + A4249_RS12025 0.13 +1.0
2,415,878 - A4249_RS12025 0.13 +0.3
2,415,878 - A4249_RS12025 0.13 -0.4
2,415,878 - A4249_RS12025 0.13 -0.7
2,415,878 - A4249_RS12025 0.13 -0.0
2,416,142 + A4249_RS12025 0.41 -0.8
2,416,142 + A4249_RS12025 0.41 +0.6
2,416,207 + A4249_RS12025 0.48 +1.3
2,416,207 + A4249_RS12025 0.48 +0.3
2,416,208 - A4249_RS12025 0.49 -0.2
2,416,208 - A4249_RS12025 0.49 +0.8
2,416,208 - A4249_RS12025 0.49 -0.4
2,416,220 - A4249_RS12025 0.50 -0.8
2,416,303 + A4249_RS12025 0.59 -0.0
2,416,304 - A4249_RS12025 0.59 -0.5
2,416,768 + +0.6
2,416,769 - +0.0
2,417,006 + A4249_RS12030 0.40 -0.5
2,417,006 + A4249_RS12030 0.40 -0.6
2,417,006 + A4249_RS12030 0.40 -0.8
2,417,007 - A4249_RS12030 0.40 -0.2
2,417,007 - A4249_RS12030 0.40 -1.1
2,417,007 - A4249_RS12030 0.40 +0.6
2,417,149 - A4249_RS12030 0.68 +0.4
2,417,149 - A4249_RS12030 0.68 -0.4
2,417,149 - A4249_RS12030 0.68 +0.1
2,417,245 + A4249_RS12030 0.86 -0.8
2,417,245 + A4249_RS12030 0.86 -1.1
2,417,245 + A4249_RS12030 0.86 -0.6
2,417,245 + A4249_RS12030 0.86 -0.3
2,417,245 + A4249_RS12030 0.86 -0.9
2,417,245 + A4249_RS12030 0.86 +0.5
2,417,245 + A4249_RS12030 0.86 -0.7
2,417,245 + A4249_RS12030 0.86 +0.3
2,417,246 - A4249_RS12030 0.86 -0.1
2,417,246 - A4249_RS12030 0.86 -0.7
2,417,310 + -0.6
2,417,310 + -0.7
2,417,311 - -0.7
2,417,343 - +0.2
2,417,408 - -0.5
2,417,418 + +0.2
2,417,419 - -0.2
2,417,431 + -2.2
2,417,431 + +0.1
2,417,434 + +0.6
2,417,597 + +0.0
2,417,598 - +0.9
2,417,747 + -0.5
2,417,747 + +0.5
2,417,748 - -0.3
2,417,748 - +0.2
2,417,786 + +0.1
2,417,786 + -0.6
2,417,786 + -2.2
2,417,786 + -0.2
2,417,787 - +0.8
2,417,787 - +0.3
2,417,816 + -0.2
2,417,816 + -0.7
2,417,816 + -0.1
2,417,816 + -0.6
2,418,133 + A4249_RS12040 0.71 +0.5
2,418,134 - A4249_RS12040 0.71 +1.4

Or see this region's nucleotide sequence