Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11550

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11545 and A4249_RS11550 are separated by 3 nucleotidesA4249_RS11550 and A4249_RS11555 are separated by 25 nucleotidesA4249_RS11555 and A4249_RS11560 overlap by 4 nucleotides A4249_RS11545: A4249_RS11545 - L,D-transpeptidase family protein, at 2,323,702 to 2,325,192 _RS11545 A4249_RS11550: A4249_RS11550 - cupin domain-containing protein, at 2,325,196 to 2,325,591 _RS11550 A4249_RS11555: A4249_RS11555 - metalloregulator ArsR/SmtB family transcription factor, at 2,325,617 to 2,326,036 _RS11555 A4249_RS11560: A4249_RS11560 - peroxiredoxin, at 2,326,033 to 2,326,692 _RS11560 Position (kb) 2325 2326Strain fitness (log2 ratio) -1 0 1at 2324.341 kb on + strand, within A4249_RS11545at 2324.342 kb on - strand, within A4249_RS11545at 2324.557 kb on + strand, within A4249_RS11545at 2324.557 kb on + strand, within A4249_RS11545at 2324.557 kb on + strand, within A4249_RS11545at 2324.558 kb on - strand, within A4249_RS11545at 2324.722 kb on + strand, within A4249_RS11545at 2324.722 kb on + strand, within A4249_RS11545at 2324.722 kb on + strand, within A4249_RS11545at 2324.722 kb on + strand, within A4249_RS11545at 2324.722 kb on + strand, within A4249_RS11545at 2324.723 kb on - strand, within A4249_RS11545at 2324.723 kb on - strand, within A4249_RS11545at 2324.723 kb on - strand, within A4249_RS11545at 2324.723 kb on - strand, within A4249_RS11545at 2324.723 kb on - strand, within A4249_RS11545at 2324.723 kb on - strand, within A4249_RS11545at 2324.724 kb on + strand, within A4249_RS11545at 2324.724 kb on + strand, within A4249_RS11545at 2324.724 kb on + strand, within A4249_RS11545at 2324.724 kb on + strand, within A4249_RS11545at 2324.725 kb on - strand, within A4249_RS11545at 2324.725 kb on - strand, within A4249_RS11545at 2324.725 kb on - strand, within A4249_RS11545at 2324.725 kb on - strand, within A4249_RS11545at 2324.824 kb on + strand, within A4249_RS11545at 2324.824 kb on + strand, within A4249_RS11545at 2324.824 kb on + strand, within A4249_RS11545at 2324.824 kb on + strand, within A4249_RS11545at 2324.824 kb on + strand, within A4249_RS11545at 2324.824 kb on + strand, within A4249_RS11545at 2324.824 kb on + strand, within A4249_RS11545at 2324.825 kb on - strand, within A4249_RS11545at 2324.825 kb on - strand, within A4249_RS11545at 2324.825 kb on - strand, within A4249_RS11545at 2324.825 kb on - strand, within A4249_RS11545at 2324.825 kb on - strand, within A4249_RS11545at 2325.040 kb on + strand, within A4249_RS11545at 2325.041 kb on - strand, within A4249_RS11545at 2325.041 kb on - strand, within A4249_RS11545at 2325.041 kb on - strand, within A4249_RS11545at 2325.041 kb on - strand, within A4249_RS11545at 2325.094 kb on + strandat 2325.094 kb on + strandat 2325.094 kb on + strandat 2325.095 kb on - strandat 2325.095 kb on - strandat 2325.095 kb on - strandat 2325.095 kb on - strandat 2325.264 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.290 kb on + strand, within A4249_RS11550at 2325.291 kb on - strand, within A4249_RS11550at 2325.291 kb on - strand, within A4249_RS11550at 2325.291 kb on - strand, within A4249_RS11550at 2325.291 kb on - strand, within A4249_RS11550at 2325.300 kb on - strand, within A4249_RS11550at 2325.300 kb on - strand, within A4249_RS11550at 2325.300 kb on - strand, within A4249_RS11550at 2325.524 kb on + strand, within A4249_RS11550at 2325.524 kb on + strand, within A4249_RS11550at 2325.525 kb on - strand, within A4249_RS11550at 2325.571 kb on - strandat 2325.571 kb on - strandat 2325.744 kb on + strand, within A4249_RS11555at 2325.790 kb on - strand, within A4249_RS11555at 2326.052 kb on + strandat 2326.053 kb on - strandat 2326.053 kb on - strandat 2326.056 kb on - strandat 2326.056 kb on - strandat 2326.056 kb on - strandat 2326.056 kb on - strandat 2326.398 kb on - strand, within A4249_RS11560at 2326.398 kb on - strand, within A4249_RS11560at 2326.398 kb on - strand, within A4249_RS11560at 2326.427 kb on + strand, within A4249_RS11560at 2326.572 kb on - strand, within A4249_RS11560

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,324,341 + A4249_RS11545 0.43 +0.6
2,324,342 - A4249_RS11545 0.43 +1.2
2,324,557 + A4249_RS11545 0.57 +0.6
2,324,557 + A4249_RS11545 0.57 -1.2
2,324,557 + A4249_RS11545 0.57 +1.3
2,324,558 - A4249_RS11545 0.57 -1.1
2,324,722 + A4249_RS11545 0.68 +0.5
2,324,722 + A4249_RS11545 0.68 +0.2
2,324,722 + A4249_RS11545 0.68 +0.2
2,324,722 + A4249_RS11545 0.68 -0.5
2,324,722 + A4249_RS11545 0.68 -0.0
2,324,723 - A4249_RS11545 0.68 +1.0
2,324,723 - A4249_RS11545 0.68 -0.1
2,324,723 - A4249_RS11545 0.68 -0.1
2,324,723 - A4249_RS11545 0.68 -0.3
2,324,723 - A4249_RS11545 0.68 +0.0
2,324,723 - A4249_RS11545 0.68 +0.6
2,324,724 + A4249_RS11545 0.69 -0.7
2,324,724 + A4249_RS11545 0.69 +0.1
2,324,724 + A4249_RS11545 0.69 -0.2
2,324,724 + A4249_RS11545 0.69 -0.2
2,324,725 - A4249_RS11545 0.69 -0.2
2,324,725 - A4249_RS11545 0.69 -0.9
2,324,725 - A4249_RS11545 0.69 +0.9
2,324,725 - A4249_RS11545 0.69 +0.1
2,324,824 + A4249_RS11545 0.75 +0.6
2,324,824 + A4249_RS11545 0.75 +0.7
2,324,824 + A4249_RS11545 0.75 +0.0
2,324,824 + A4249_RS11545 0.75 +0.4
2,324,824 + A4249_RS11545 0.75 -0.5
2,324,824 + A4249_RS11545 0.75 -0.2
2,324,824 + A4249_RS11545 0.75 -0.6
2,324,825 - A4249_RS11545 0.75 -0.8
2,324,825 - A4249_RS11545 0.75 +0.1
2,324,825 - A4249_RS11545 0.75 +0.8
2,324,825 - A4249_RS11545 0.75 -0.3
2,324,825 - A4249_RS11545 0.75 -0.2
2,325,040 + A4249_RS11545 0.90 -1.2
2,325,041 - A4249_RS11545 0.90 -0.3
2,325,041 - A4249_RS11545 0.90 -0.2
2,325,041 - A4249_RS11545 0.90 +0.2
2,325,041 - A4249_RS11545 0.90 -0.3
2,325,094 + -0.2
2,325,094 + +0.2
2,325,094 + -0.2
2,325,095 - +0.4
2,325,095 - -0.1
2,325,095 - +0.3
2,325,095 - +0.5
2,325,264 + A4249_RS11550 0.17 -0.3
2,325,290 + A4249_RS11550 0.24 +0.8
2,325,290 + A4249_RS11550 0.24 +0.5
2,325,290 + A4249_RS11550 0.24 -1.2
2,325,290 + A4249_RS11550 0.24 +0.5
2,325,290 + A4249_RS11550 0.24 +0.4
2,325,291 - A4249_RS11550 0.24 +0.1
2,325,291 - A4249_RS11550 0.24 +0.5
2,325,291 - A4249_RS11550 0.24 +0.7
2,325,291 - A4249_RS11550 0.24 -0.8
2,325,300 - A4249_RS11550 0.26 -0.3
2,325,300 - A4249_RS11550 0.26 +0.1
2,325,300 - A4249_RS11550 0.26 +0.1
2,325,524 + A4249_RS11550 0.83 -0.5
2,325,524 + A4249_RS11550 0.83 -0.9
2,325,525 - A4249_RS11550 0.83 +0.3
2,325,571 - -0.7
2,325,571 - -0.3
2,325,744 + A4249_RS11555 0.30 +1.7
2,325,790 - A4249_RS11555 0.41 +0.8
2,326,052 + -0.7
2,326,053 - +0.3
2,326,053 - +0.1
2,326,056 - -0.7
2,326,056 - +1.2
2,326,056 - +0.3
2,326,056 - -0.3
2,326,398 - A4249_RS11560 0.55 +0.2
2,326,398 - A4249_RS11560 0.55 -1.5
2,326,398 - A4249_RS11560 0.55 +0.9
2,326,427 + A4249_RS11560 0.60 +1.7
2,326,572 - A4249_RS11560 0.82 +0.3

Or see this region's nucleotide sequence